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IDR / bioformats

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software). Bio-Formats is released under the GNU General Public License (GPL); commercial licenses are available from Glencoe Software.
http://www.openmicroscopy.org/site/products/bio-formats
GNU General Public License v2.0
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BDV: Fix for tiled reading #21

Closed sbesson closed 4 years ago

sbesson commented 4 years ago

Backports performance improvements from https://github.com/ome/bioformats/pull/3549 into the IDR fork of Bio-Formats

Note this ignores other improvements made to BDV in https://github.com/ome/bioformats/pull/3443 and https://github.com/ome/bioformats/pull/3575 as these contain memo-breaking change. After a closer examination, I convinced myself that the issues reported in https://github.com/ome/bioformats/issues/3567 only affected the daily CI builds.

With this PR the expectation is that immediately:

In other terms, this is a best effort to contain the amount of changes required in the scope of the IDR submission, to quickly deploy them onto IDR and publish the study without requiring a complete cache regeneration process. As discussed on Monday, the hope is to schedule another round of merging of Bio-Formats 6.x into this fork to reduce the divergence and maintenance costs and benefit from all formats improvements made in the mainline.

sbesson commented 4 years ago

Merging for deploying onto test84