IDR / deployment

Deployment infrastructure for the Image Data Resource
https://idr.openmicroscopy.org/about/deployment.html
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Bump omeroreadwrite data volume to 1.5TB #376

Closed sbesson closed 2 years ago

sbesson commented 2 years ago

Routine expansion of the OMERO data volume as the imported data grows to bring the data usage below the 80% threshold

sbesson commented 2 years ago

Similarly to https://github.com/IDR/deployment/pull/275#issuecomment-698376703, xfs_growfs is required for all deployments cloned from a 1.2TB volume

[sbesson@pilot-idr0136-omeroreadwrite ~]$ df -h
Filesystem                    Size  Used Avail Use% Mounted on
devtmpfs                       32G     0   32G   0% /dev
tmpfs                          32G   16K   32G   1% /dev/shm
tmpfs                          32G  888K   32G   1% /run
tmpfs                          32G     0   32G   0% /sys/fs/cgroup
/dev/vda1                     100G  8.1G   92G   9% /
/dev/vdb                      800G  543G  258G  68% /var/lib/pgsql
/dev/vdc                      1.2T 1005G  195G  84% /data
10.35.199.251:/fg_bioimage    522T  482T   40T  93% /nfs/bioimage
10.35.199.252:/fg_biostudies  391T  364T   27T  94% /nfs/biostudies
tmpfs                         6.3G     0  6.3G   0% /run/user/0
tmpfs                         6.3G     0  6.3G   0% /run/user/1000
tmpfs                         6.3G     0  6.3G   0% /run/user/11615
[sbesson@pilot-idr0136-omeroreadwrite ~]$ cd /sudo xfs_growfs^C
[sbesson@pilot-idr0136-omeroreadwrite ~]$ sudo xfs_growfs /dev/vdc
meta-data=/dev/vdc               isize=512    agcount=4, agsize=78643200 blks
         =                       sectsz=512   attr=2, projid32bit=1
         =                       crc=1        finobt=0 spinodes=0
data     =                       bsize=4096   blocks=314572800, imaxpct=5
         =                       sunit=0      swidth=0 blks
naming   =version 2              bsize=4096   ascii-ci=0 ftype=1
log      =internal               bsize=4096   blocks=153600, version=2
         =                       sectsz=512   sunit=0 blks, lazy-count=1
realtime =none                   extsz=4096   blocks=0, rtextents=0
data blocks changed from 314572800 to 393216000
[sbesson@pilot-idr0136-omeroreadwrite ~]$ df -h
Filesystem                    Size  Used Avail Use% Mounted on
devtmpfs                       32G     0   32G   0% /dev
tmpfs                          32G   16K   32G   1% /dev/shm
tmpfs                          32G  888K   32G   1% /run
tmpfs                          32G     0   32G   0% /sys/fs/cgroup
/dev/vda1                     100G  8.1G   92G   9% /
/dev/vdb                      800G  543G  258G  68% /var/lib/pgsql
/dev/vdc                      1.5T 1005G  495G  68% /data
10.35.199.251:/fg_bioimage    522T  482T   40T  93% /nfs/bioimage
10.35.199.252:/fg_biostudies  391T  364T   27T  94% /nfs/biostudies
tmpfs                         6.3G     0  6.3G   0% /run/user/0
tmpfs                         6.3G     0  6.3G   0% /run/user/1000
tmpfs                         6.3G     0  6.3G   0% /run/user/11615