IDR idr-utils issues - Githubissues

IDR / idr-utils

Utility scripts for managing IDR submissions

BSD 2-Clause "Simplified" License

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issues

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Add script for s3 stats

#65 dominikl opened 1 month ago
0
Add script to set channel names

#64 dominikl opened 1 month ago
0
Fix check_annotations.py script

#63 dominikl opened 4 months ago
0
No check

#62 will-moore closed 7 months ago
2
Codon scripts: update scripts to handle private and public data copy

#61 sbesson closed 9 months ago
0
Codon scripts

#60 sbesson closed 9 months ago
0
Add script to fix names

#59 dominikl opened 9 months ago
2
Log errors at logging.error() level

#58 will-moore opened 1 year ago
2
Add script to fix duplicated URLs annotations

#57 dominikl opened 1 year ago
7
Filesets to swap

#56 will-moore closed 9 months ago
21
Add check_pixels.py script

#55 will-moore opened 1 year ago
52
Add scripts/managed_repo_symlinks.py

#54 will-moore opened 1 year ago
2
Add swap_filesets.py

#53 will-moore opened 1 year ago
2
Remove Publication Title from description in study_parser.py

#52 will-moore opened 1 year ago
7
Add url to FBbi imaging method ontology

#51 dominikl opened 1 year ago
1
Check annotations export to csv

#50 will-moore closed 1 year ago
3
Add Sample Type to stats.py output

#49 will-moore closed 2 years ago
3
Refactor parsing utility to generate JSON reports of the study files

#48 sbesson closed 6 months ago
7
Output to csv even if no errors

#47 dominikl closed 2 years ago
0
Little bugfix for the attach_file.py script

#46 dominikl closed 2 years ago
0
Update releases.py logic to cope with prod100 and greater

#45 sbesson closed 3 years ago
3
Add script to find images

#44 dominikl closed 3 years ago
4
More util scripts?

#43 dominikl opened 3 years ago
1
Add script to attach files

#42 dominikl closed 3 years ago
2
Script to set channel names

#41 dominikl closed 1 month ago
9
create_dataset.sh script

#40 dominikl closed 3 years ago
0
Study parser decoding errors

#39 sbesson closed 3 years ago
2
Add script to clean orphaned map annotations

#38 sbesson closed 3 years ago
7
Add support for Experiment Organism and Screen Organism keys

#37 sbesson closed 3 years ago
4
Unicode support for study_parser.py

#36 dominikl opened 3 years ago
1
Idr0097 updates

#35 sbesson closed 3 years ago
2
Check for top-level study

#34 manics closed 3 years ago
0
check_annotations improvements

#33 dominikl closed 3 years ago
0
Remove update_compounds script

#32 sbesson closed 3 years ago
0
check_annotations.py: Add possiblity to 'annotate' annotations.csv

#31 dominikl closed 3 years ago
2
Check annotation report

#30 sbesson closed 3 years ago
3
Check annotation fixes

#29 sbesson closed 3 years ago
2
Prevent git-restore-mtime-bare.py from setting timestamps on symlinks

#28 sbesson closed 3 years ago
3
Stdout not available on stats.py

#27 pwalczysko opened 3 years ago
2
Add duplication check to check_annotations script

#26 dominikl closed 3 years ago
2
Bug in check_annotations.py

#25 dominikl closed 3 years ago
1
Add first version of script to update compounds URLs

#24 sbesson closed 3 years ago
1
improve reporting of check_annotations

#23 pwalczysko opened 3 years ago
0
Yeast genes cleanup

#22 sbesson closed 3 years ago
3
Remove unnecessary check for bulk.yml

#21 sbesson closed 3 years ago
1
Add disk usage to release.py script

#20 pwalczysko opened 4 years ago
1
Add first version of script computing the aggregated stats for a release

#19 sbesson closed 4 years ago
6
stats.py: fix calculation of Sets

#18 sbesson closed 4 years ago
1
Summary of stats.py solutions

#17 manics closed 4 years ago
0
Refactor stats.py

#16 manics closed 4 years ago
1