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IDR
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idr-utils
Utility scripts for managing IDR submissions
BSD 2-Clause "Simplified" License
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Add script for s3 stats
#65
dominikl
opened
1 month ago
0
Add script to set channel names
#64
dominikl
opened
1 month ago
0
Fix check_annotations.py script
#63
dominikl
opened
4 months ago
0
No check
#62
will-moore
closed
7 months ago
2
Codon scripts: update scripts to handle private and public data copy
#61
sbesson
closed
9 months ago
0
Codon scripts
#60
sbesson
closed
9 months ago
0
Add script to fix names
#59
dominikl
opened
9 months ago
2
Log errors at logging.error() level
#58
will-moore
opened
1 year ago
2
Add script to fix duplicated URLs annotations
#57
dominikl
opened
1 year ago
7
Filesets to swap
#56
will-moore
closed
9 months ago
21
Add check_pixels.py script
#55
will-moore
opened
1 year ago
52
Add scripts/managed_repo_symlinks.py
#54
will-moore
opened
1 year ago
2
Add swap_filesets.py
#53
will-moore
opened
1 year ago
2
Remove Publication Title from description in study_parser.py
#52
will-moore
opened
1 year ago
7
Add url to FBbi imaging method ontology
#51
dominikl
opened
1 year ago
1
Check annotations export to csv
#50
will-moore
closed
1 year ago
3
Add Sample Type to stats.py output
#49
will-moore
closed
2 years ago
3
Refactor parsing utility to generate JSON reports of the study files
#48
sbesson
closed
6 months ago
7
Output to csv even if no errors
#47
dominikl
closed
2 years ago
0
Little bugfix for the attach_file.py script
#46
dominikl
closed
2 years ago
0
Update releases.py logic to cope with prod100 and greater
#45
sbesson
closed
3 years ago
3
Add script to find images
#44
dominikl
closed
3 years ago
4
More util scripts?
#43
dominikl
opened
3 years ago
1
Add script to attach files
#42
dominikl
closed
3 years ago
2
Script to set channel names
#41
dominikl
closed
1 month ago
9
create_dataset.sh script
#40
dominikl
closed
3 years ago
0
Study parser decoding errors
#39
sbesson
closed
3 years ago
2
Add script to clean orphaned map annotations
#38
sbesson
closed
3 years ago
7
Add support for Experiment Organism and Screen Organism keys
#37
sbesson
closed
3 years ago
4
Unicode support for study_parser.py
#36
dominikl
opened
3 years ago
1
Idr0097 updates
#35
sbesson
closed
3 years ago
2
Check for top-level study
#34
manics
closed
3 years ago
0
check_annotations improvements
#33
dominikl
closed
3 years ago
0
Remove update_compounds script
#32
sbesson
closed
3 years ago
0
check_annotations.py: Add possiblity to 'annotate' annotations.csv
#31
dominikl
closed
3 years ago
2
Check annotation report
#30
sbesson
closed
3 years ago
3
Check annotation fixes
#29
sbesson
closed
3 years ago
2
Prevent git-restore-mtime-bare.py from setting timestamps on symlinks
#28
sbesson
closed
3 years ago
3
Stdout not available on stats.py
#27
pwalczysko
opened
3 years ago
2
Add duplication check to check_annotations script
#26
dominikl
closed
3 years ago
2
Bug in check_annotations.py
#25
dominikl
closed
3 years ago
1
Add first version of script to update compounds URLs
#24
sbesson
closed
3 years ago
1
improve reporting of check_annotations
#23
pwalczysko
opened
3 years ago
0
Yeast genes cleanup
#22
sbesson
closed
3 years ago
3
Remove unnecessary check for bulk.yml
#21
sbesson
closed
3 years ago
1
Add disk usage to release.py script
#20
pwalczysko
opened
4 years ago
1
Add first version of script computing the aggregated stats for a release
#19
sbesson
closed
4 years ago
6
stats.py: fix calculation of Sets
#18
sbesson
closed
4 years ago
1
Summary of stats.py solutions
#17
manics
closed
4 years ago
0
Refactor stats.py
#16
manics
closed
4 years ago
1
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