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IDR / idr.openmicroscopy.org

Source for the IDR static website.
https://idr.openmicroscopy.org/about
Creative Commons Attribution 4.0 International
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Add stats for new studies to be released in prod106 #157

Closed sbesson closed 2 years ago

sbesson commented 2 years ago

Includes updates to idr0124 and idr0115

Still waiting for idr0128, idr0129 and idr0130 before updating releases.tsv /cc @pwalczysko

pwalczysko commented 2 years ago

Failing checks ?

sbesson commented 2 years ago

The Jekyll Docker images seemed to have been bumped to Ruby 3.1 while the pages tag is still as Jekyll 3.9.0 - it looks like this causes issue when using CSV data files -

/usr/local/lib/ruby/3.1.0/csv.rb:1668:in `read': wrong number of arguments (given 2, expected 1) (ArgumentError)
    from /usr/gem/gems/jekyll-3.9.0/lib/jekyll/readers/data_reader.rb:62:in `read_data_file'
    from /usr/gem/gems/jekyll-3.9.0/lib/jekyll/readers/data_reader.rb:46:in `block in read_data_to'
    from /usr/gem/gems/jekyll-3.9.0/lib/jekyll/readers/data_reader.rb:38:in `each'
    from /usr/gem/gems/jekyll-3.9.0/lib/jekyll/readers/data_reader.rb:38:in `read_data_to'
    from /usr/gem/gems/jekyll-3.9.0/lib/jekyll/readers/data_reader.rb:20:in `read'
    from /usr/gem/gems/jekyll-3.9.0/lib/jekyll/reader.rb:18:in `read'
    from /usr/gem/gems/jekyll-3.9.0/lib/jekyll/site.rb:164:in `read'
    from /usr/gem/gems/jekyll-3.9.0/lib/jekyll/site.rb:69:in `process'
    from /usr/gem/gems/jekyll-3.9.0/lib/jekyll/command.rb:28:in `process_site'
    from /usr/gem/gems/jekyll-3.9.0/lib/jekyll/commands/build.rb:65:in `build'
    from /usr/gem/gems/jekyll-3.9.0/lib/jekyll/commands/build.rb:36:in `process'
    from /usr/gem/gems/jekyll-3.9.0/lib/jekyll/commands/build.rb:18:in `block (2 levels) in init_with_program'
    from /usr/gem/gems/mercenary-0.3.6/lib/mercenary/command.rb:220:in `block in execute'
jekyll 3.9.0 | Error:  wrong number of arguments (given 2, expected 1)
    from /usr/gem/gems/mercenary-0.3.6/lib/mercenary/command.rb:220:in `each'
    from /usr/gem/gems/mercenary-0.3.6/lib/mercenary/command.rb:220:in `execute'
    from /usr/gem/gems/mercenary-0.3.6/lib/mercenary/program.rb:42:in `go'
    from /usr/gem/gems/mercenary-0.3.6/lib/mercenary.rb:19:in `program'
    from /usr/gem/gems/jekyll-3.9.0/exe/jekyll:15:in `<top (required)>'
    from /usr/gem/bin/jekyll:25:in `load'
    from /usr/gem/bin/jekyll:25:in `<main>'

This is similar to https://github.com/aarongustafson/jekyll-webmention_io/issues/147

Using jekyll/builder:latest seems to fix the issue

pwalczysko commented 2 years ago

@sbesson PR against youir branch here opened https://github.com/sbesson/idr.openmicroscopy.org/pull/2

pwalczysko commented 2 years ago

in https://github.com/sbesson/idr.openmicroscopy.org/pull/2/commits/53ce2cd9974a741f855e9f44e5c1160c476081da I have also added the idr0135 for @dominikl . I have left out the 115 as the same line is already added here by @sbesson

dominikl commented 2 years ago

Thanks Petr. Didn’t realise Seb already did the stats for idr0115. Looks good to me 👍