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IDR / ome-ngff-samples

A catalog of all public OME-NGFF representative samples derived from IDR data
https://idr.github.io/ome-ngff-samples
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aws s3 download instructions #16

Open will-moore opened 2 years ago

will-moore commented 2 years ago

To download via aws, you need e.g. --endpoint-url:

$ aws s3 sync --no-sign-request --endpoint-url https://uk1s3.embassy.ebi.ac.uk s3://idr/zarr/v0.4/idr0062A/6001240.zarr .

It would be useful to have this info on the samples page itself. Maybe even an option to copy the above command for a given sample?

pwalczysko commented 2 years ago

Better than ending this command with ., it is to have the folder pre-created with correct name, things run cleaner like that: Otherwise you would have to collect the downloaded folders into a newly created folder manually after the aws was run.

mkdir 6001240.zarr
aws s3 sync --no-sign-request --endpoint-url https://uk1s3.embassy.ebi.ac.uk s3://idr/zarr/v0.4/idr0062A/6001240.zarr 6001240.zarr
jburel commented 1 year ago

This should probably go under ngff-tools under a "download" section