IDR / ome-ngff-samples

A catalog of all public OME-NGFF representative samples derived from IDR data
https://idr.github.io/ome-ngff-samples
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Plate thumbnails #3

Closed sbesson closed 2 years ago

sbesson commented 2 years ago

In the current version of the published catalog, thumbnails are broken for all HCS OME-NGFF datasets.

The current table generation logic extracts the ID from the S3 URL to construct a webclient/render_thumbnail URL. This relies on the assumption that the URL ends with <image_id>.zarr and thus applies exclusively to individually converted images.

The simplest solution would be to capture either ID of a representative image for the dataset or the full URL to a representative thumbnail as an extra column.

Possibly, this points out the fact that images and plates should be maintained in separate CSV files and/or represented as separate pages in the generated page.