Closed will-moore closed 10 months ago
Testing... installed on idr-testing.
(venv3) [root@test120-omeroreadwrite wmoore]# pip install git+https://github.com/will-moore/omero-mkngff.git@dont_walk_arrays
And on idr0125-pilot:
(venv3) [root@pilot-idr0125-omeroreadwrite wmoore]# pip install git+https://github.com/will-moore/omero-mkngff.git@dont_walk_arrays
Collecting git+https://github.com/will-moore/omero-mkngff.git@dont_walk_arrays
Cloning https://github.com/will-moore/omero-mkngff.git (to revision dont_walk_arrays) to /tmp/pip-req-build-a9c45z58
Running command git clone -q https://github.com/will-moore/omero-mkngff.git /tmp/pip-req-build-a9c45z58
Running command git checkout -b dont_walk_arrays --track origin/dont_walk_arrays
Switched to a new branch 'dont_walk_arrays'
Branch dont_walk_arrays set up to track remote branch dont_walk_arrays from origin.
Resolved https://github.com/will-moore/omero-mkngff.git to commit 7db8b499708112ea3f250c1bbf82e920c269d8d3
Updated again on idr-testing and idr0125-pilot to include last commit.
Tested today with idr0013. https://github.com/IDR/idr-metadata/issues/644#issuecomment-1727966209 3 minutes per fileset
For info about that last commit, see https://github.com/IDR/idr-metadata/issues/644#issuecomment-1729155361
NB: this is on top of #9.
Fixes #10.
This avoids traversing all the chunk directories under
.zarray
directory, which we know will only contain chunks.