IDR / omero-mkngff

Plugin to swap OMERO filesets with NGFF
GNU General Public License v2.0
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Automatically create symlinks #3

Closed will-moore closed 11 months ago

will-moore commented 1 year ago

@joshmoore I'm wondering what's the best way to automate the creation of symlinks, for when we're dealing with a large number of Filesets.

It seems to me that one option is to add symlink creation into the omero mkngff sql command, so create the *_converted directory and links at the same time as generating the sql. This could be optional behaviour under a --symlink flag, or we could add a separate symlink command that uses the same logic as def sql to get the prefix etc?

I was previously using a script to automate symlink creation at https://github.com/IDR/idr-utils/pull/54