Primary analysis needed for public 2 scRNAseq datasets

[beamilon]

Could we create primary analysis for the single cell workbench for the following 2 datasets?

• 9 wko, mouse, scRNA-seq, cochlea, spiral ganglion neurons (Decibel Tx)
• P25-P27, mouse, scRNA-seq, cochlear sensory neurons (Goodrich)

[jorvis]

These are dataset IDs: 2f79f784-f7f7-7dc3-9b3e-4c87a4346d91 c32835d3-cac4-bb0e-a90a-0b41dec6617a

I ran it, but neither had primary analysis data to parse out. The second one, for example, has only coluns 'tissue_type' and 'replicate'

[beamilon]

Ok. Thanks. We will probably need to contact them if they want to have one.

[jorvis]

Closing then until this is needed again and new data is acquired.

[songeric1107]

anything I can help? I can add a column for primary analysis purposes, do you want me to do it?

[beamilon]

@songeric1107 . If it is easy to do, you can do it. I don't know how it works and if we ask for permission before publishing a primary analysis.

[beamilon]

@songeric1107 Ronna said to go ahead.

[songeric1107]

@jorvis , I add extra column "cluster_lab" for both datasets

• c32835d3-cac4-bb0e-a90a-0b41dec6617a.h5ad

• 2f79f784-f7f7-7dc3-9b3e-4c87a4346d91.h5ad

[jorvis]

OK, clustering analysis added to both.

[songeric1107]

This dataset is one of the earliest scRNA datasets we load to the gEAR (1/2019). At that time, we are not finalized what to load to gEAR. I finally found the tsne coordinate of this dataset, I will re-upload it, @jorvis could replace it in the public profile.

[songeric1107]

I reupload the dataset again, here is the link

https://umgear.org/dataset_curator.html#/dataset/53f99080-29cd-44ca-4c14-b26ca1ad7588/displays

@jorvis , could you please add the primary analysis to this? thank you

[jorvis]

Can this be closed now since #221 is?

[songeric1107]

I guess so