Generate orthology data structure on disk to use with annotations for cross-organism tasks

IGS / gEAR

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

https://umgear.org

GNU Affero General Public License v3.0

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Generate orthology data structure on disk to use with annotations for cross-organism tasks #351

Open jorvis opened 2 years ago

jorvis commented 2 years ago

Related to / subtask of issue #257

Initially using data from AGR

RLC-DCPPC commented 2 years ago

need to select 1:1 mapping for orthology maps to give to Shaun

RLC-DCPPC commented 2 years ago

Need to think more about this in the case where there are multiple mappings (many orthologs).

Inform the user. Let them choose?. Explain why we are displaying the one(s) we show.

mgiglio99 commented 2 years ago

Related to Bob's post above - also consider possible different needs for different parts of gEAR. For example, perhaps can show the users all (or at least more) on pages looking at the same gene across species, but use just one when in ProjectR.