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IGS / gEAR

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
https://umgear.org
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Changing scoring method results in nonsensical values for svgs #642

Open JPReceveur opened 3 months ago

JPReceveur commented 3 months ago

On the expression page, changing the scoring method dropdown for svgs results in values that don't make sense. Selecting tissue scope also results in the color gradient showing no numbers (screenshot from the hearing profile). Is there any reason someone would want a scoring other than gene?

Screenshot 2024-02-03 at 10 58 22 AM
adkinsrs commented 3 months ago

Will let @jorvis comment on the scenarios for the other options. I'll double-check and ensure the tissue/dataset scoring is correct (consistent with v1 of gear)

jorvis commented 3 months ago

Here is the rationale for the different scoring scopes, which was a feature requested by Ronna since the beginning. We can certainly revisit and see if we want to keep this. I agree, it seems to be seldom changed.

Screenshot from 2024-02-03 15-17-18

adkinsrs commented 3 months ago

I may be misheard at the time, but I believe one of the workshop attendees for Joe or Joshua's workshop had a question that indirectly asked for the dataset-level scoring