When projecting a weighted gene cart, if all weights are 1 or 0, then add "binary gene count" projection option

[carlocolantuoni]

@adkinsrs has already added the ability to simply count the number of genes that are expressed at non-zero values when projecting unweighted gene carts. this method only appears as an option when projecting unweighted gene carts, as it does not incorporate gene weights. however, in cases where all weight are 0 or 1 (i have many gene carts of this type), it would be useful to count the number of genes with "1" weights that are non-zero in the new dataset? can we check the range of a values in a genecart and add this option for weighted genecarts if all values are 1 or 0?

[adkinsrs]

What do we do if there are 50 lists of weights, and some lists are binary, and others are continuous (maybe there are some PCA columns. Do we enable the binary gene count option, or disable? In addition, if enabled, do we make only the 1/0 columns selectable?

[carlocolantuoni]

Good question, lets make it simple and only enable if all the patterns/columns are only 1/0

On Mon, Mar 11, 2024, 09:13 Shaun Adkins @.***> wrote:

What do we do if there are 50 lists of weights, and some lists are binary, and others are continuous (maybe there are some PCA columns. Do we enable the binary gene count option, or disable? In addition, if enabled, do we make only the 1/0 columns selectable?

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[carlocolantuoni]

hey shaun - to confirm - this is "completed" but wont be functional til v2 is up, right?

[adkinsrs]

Correct