put the human's inner ear cells in order by the level of gene expression

IGS / gEAR

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.

https://umgear.org

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put the human's inner ear cells in order by the level of gene expression #688

Open gear-portal-team opened 4 weeks ago

gear-portal-team commented 4 weeks ago

From: Niusha Kasiri

Email: nkasiri@ucdavis.edu

Server IP: 10.142.0.16

Msg: Hello dear manager, I want to put the human's inner ear cells (IHC, OHC, VHC,...) in order by the level of gene expression. However, I couldn't figure out how to to that or didn't find any table about it. Can you please help me regarding this matter and guide me? Thank you in advance.

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Screenshot: None

adkinsrs commented 3 weeks ago

In the dataset curator (single and multigene) for v2, you can sort by columns (i.e. cell type) after the initial plot and save the curation.

For whomever wants to answer.

jorvis commented 3 weeks ago

So they can't do it currently, but this is a feature coming soon.

adkinsrs commented 3 weeks ago

For the multigene curator only in v1 you can sort before generating the plot but seems to user wants to sort based on what they see

For the dataset curator in v1, there is a drag-n-drop sortable after you plot, which is restricted to categorical data. You sort by the category group rather than by specific columns, so if you use the same category group for something like "X-axis" and "Facet-column" it adjusts the order of both. See "Order" section in bottom-left of below image

DanLesperance commented 3 weeks ago

Reached out to user and let them know this feature is coming and that I'll be in touch when v2 comes live