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IGS / gEAR

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
https://umgear.org
GNU Affero General Public License v3.0
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Assess updated scanpy clustering tutorial #696

Open adkinsrs opened 4 months ago

adkinsrs commented 4 months ago

Legacy tutorial we use in the single-cell workbench currently https://scanpy.readthedocs.io/en/stable/tutorials/basics/clustering-2017.html

New tutorial to consider https://scanpy.readthedocs.io/en/stable/tutorials/basics/clustering.html

In general the steps are the same, but there are a couple minor additions/alterations as well as different plots displayed. I think it would be wise to assess these to see if we should stick with the old, change to the new, or use the best of both worlds.

adkinsrs commented 3 months ago

FWIW I implemented the original tutorial (what was already on v1).

In order to switch to the new tutorial contents, it will take some additional effort now.