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IGS / gEAR

The gEAR Portal was created as a data archive and viewer for gene expression data including microarrays, bulk RNA-Seq, single-cell RNA-Seq and more.
https://umgear.org
GNU Affero General Public License v3.0
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Could not fetch dataset comparison issue on tablet #818

Open samgevine opened 1 month ago

samgevine commented 1 month ago

Using “Adult zebrafish RNA-seq, HC and nsSC” dataset, encountered with the following error when trying to use comparison tool.

IMG_1255

samgevine commented 1 month ago

Comparing these conditions. IMG_1256

adkinsrs commented 1 month ago

Found the error in our logs, and it was non-descript... I was able to replicate this with this dataset, so it requires more investigating. I noticed it only has 6 observations, so it may be one of the functions in the scanpy package (such as rank_genes_groups) may not work with such a limited number of observations.