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IGS / portal_client

Python-based client for downloading data made available through portals powered by the GDC-based portal system..
MIT License
16 stars 17 forks source link

HMP username #11

Closed jacknicoludis closed 5 years ago

jacknicoludis commented 5 years ago

I have the same question. I'm trying to download files from the HMP Project Data Portal. I requested a password from hmpdacc.org but when I try to transfer files, I get the error that none of the urls succeeded. Here is my command-line submission and a section of the output when running in debug mode: 

portal_client --manifest ~/path-to-file/hmp_cart_4364ccfe46.tsv --destination ~/path-to-file/data --endpoint-priority FASP,HTTP --user jacknicoludis --debug
2019-09-11 12:53:17,267 - aspera - DEBUG - Command: ascp -T -v -l 300M jacknicoludis@aspera.ihmpdcc.org:/t2d/genome/microbiome/16s/analysis/hmqcp/HMP2_J45271_1_ST_T0_B0_0120_ZOZOW1T-6027-1_APATM.biom /Users/jacknicoludis/Dropbox/insight/drugmetabolism/HMP-T2D-abundances/data/HMP2_J45271_1_ST_T0_B0_0120_ZOZOW1T-6027-1_APATM.biom.partial
2019-09-11 12:53:17,267 - aspera - DEBUG - In get_ascp_env.
2019-09-11 12:53:17,268 - aspera - INFO - Setting ASPERA_SCP_PASS environment variable.
2019-09-11 12:53:17,273 - aspera - INFO - Beginning transfer.
2019-09-11 12:53:20,621 - aspera - INFO - Invocation of ascp complete. Return code: 1.
2019-09-11 12:53:20,622 - aspera - ERROR - Aspera authentication failure.
2019-09-11 12:53:20,622 - manifest_processor.ManifestProcessor - ERROR - Aspera transfer failed.
2019-09-11 12:53:20,622 - manifest_processor.ManifestProcessor - DEBUG - Returning error
Skipping file ID 76612bd9a41885add4f6b0b768365c93 as none of the URLs ['FASP'] succeeded.

I just requested my account earlier today so it is possible that it hasn't been approved...

victor73 commented 5 years ago

This is duplicated in #9.