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IGS / portal_client

Python-based client for downloading data made available through portals powered by the GDC-based portal system..
MIT License
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Keep getting ModuleNotFoundError: No module named 'boto.vendored.six.moves message #29

Open Pan1455 opened 1 month ago

Pan1455 commented 1 month ago

Trying to use portal_client to download files from the HMP using the manifest file but "ModuleNotFoundError: No module named 'boto.vendored.six.moves" error keeps showing up. Turns out boto isn't supported anymore in Python 3.12.5; however, portal_client still needs boto to function. Not sure how to fix this issue and looking for advice.

SandPadres commented 1 month ago

Try just downloading the HMP files with aws s3 cp s3://hmpdcc/hmp1/hhs/microbiome/wms/analysis/metabolic_prof/humann1_2012/compressed_files/SRS013261_vs_KEGG_v54.tar.bz2 . --no-sign-request See https://github.com/IGS/portal_client/issues/27