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IHCC-cohorts / GECKO

Genomics Cohorts Knowledge Ontology
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Revise workflow for updating templates #20

Closed beckyjackson closed 3 years ago

beckyjackson commented 3 years ago

The general workflow is similar to that for the IHCC data harmonization:

  1. Create a new branch
  2. Run make init-cogs EMAIL=user@email.com
  3. Open Google sheet (link shown by step 2) and make changes
  4. Run make update

I also removed the template strings from all src/ontology/templates files so they will look a little less confusing 😄

jamesaoverton commented 3 years ago

I think that I want the ROBOT template rows in GECKO. I don't want the ROBOT template rows in the data-harmonization any more, since those are for curators. But GECKO is an ontology and I expect it to be edited by ontology developers. I must have been unclear about that -- sorry!

The rest of this looks good.

beckyjackson commented 3 years ago

Done!