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IHEC / epiATLAS-metadata-harmonization

IHEC metadata merging and cleanup
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"superior vena cava endothelial cells" and "great saphenous vein endothelial cell": use CL "vein endothelial cell"? #23

Closed quirinmanz closed 2 years ago

quirinmanz commented 3 years ago

No CL is available for "superior vena cava endothelial cells" and "great saphenous vein endothelial cell, but "vein endothelial cell" is available example ids: "IHECRE00004757.1", "IHECRE00003772.1", "IHECRE00003770.1", "IHECRE00003782.1"

rnakato commented 3 years ago

Same with #24, we would like to keep the information of "superior vena cava" and "great saphenous vein" somewhere if possible. Could we use another column? (Ryuichiro Nakato)

SchulzLab commented 2 years ago

We have moved the superior vena cava or great saphenous vein pat to the origin_sample column and changed the cell type name to the term vein endothelial cell (as matching to the CL term)