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IHEC / epiATLAS-metadata-harmonization

IHEC metadata merging and cleanup
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Conflict between ontology and tissue_type for colon primary tissues #58

Closed quirinmanz closed 2 years ago

quirinmanz commented 2 years ago
Most of the entries CEEHRC colon entries have the ontology for ascending colon while the tissue_type is colon. Some have ascending colon in tissue_type while the ontology is colonic epithelium. Overview: EpiRR sample_ontology_uri tissue_type
IHECRE00001010.4 http://purl.obolibrary.org/obo/UBERON_0000397 Large Intestine-Colon-Ascending (Right)
IHECRE00001011.4 http://purl.obolibrary.org/obo/UBERON_0000397 Large Intestine-Colon-Ascending (Right)
IHECRE00001005.4 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon
IHECRE00001007.4 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon
IHECRE00001013.4 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon
IHECRE00001017.4 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon
IHECRE00001018.4 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon
IHECRE00001019.4 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon
IHECRE00001020.4 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon
IHECRE00001008.4 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon-Ascending (Right)
IHECRE00001015.4 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon-Ascending (Right)
IHECRE00001016.4 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon-Ascending (Right)
IHECRE00001021.4 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon-Ascending (Right)
IHECRE00001022.4 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon-Ascending (Right)
IHECRE00001232.5 http://purl.obolibrary.org/obo/UBERON_0001156 Large Intestine-Colon-Ascending (Right)
mlist commented 2 years ago

ids 1005.4 through 1020.4 should be colon UBERON:0001155; all the others should be UBERON:0001156.