absoffthewake
commented
6 years ago Entire output: C:\SNOMEDCONV\rf2-to-rf1-conversion-master>java -jar -Xms2g -Xmx8g target\RF2toRF1Converter.jar -b C:\SNOMEDCONV\SnomedCT_USEditionRF2_PRODUCTION_20180901T120000Z.zip Initialising Database Creating database schema 10.61% complete. Extracting RF2 International Edition Data... 17.16% complete. Loading US common RF2 Data... 19.19% complete. Loading US specific RF2 Data... 35.44% complete. Calculating RF2 snapshot... 54.85% complete. Converting RF2 to RF1... 62.53% complete. Skipping generation of RF1 History. Set -h parameter if this is required (selected Editions only). 89.39% complete. Exporting RF1 to file... 91.87% complete. Loading Inferred Relationship Hierarchy for Qualifying Relationship computation...
Process failed in 36.66 min after completing 407/443 operations. Relationship Ids not used. Cleaning up resources... 92.33% complete.Exception in thread "main" org.ihtsdo.snomed.rf2torf1conversion.RF1ConversionException: IO Exception while loading Relationship file: C:\Users\username\AppData\Local\Temp\1538062660686-0\sct2_Relationship_Snapshot_INT_20180901.txt at org.ihtsdo.snomed.rf2torf1conversion.GraphLoader.loadRelationshipFile(GraphLoader.java:52) at org.ihtsdo.snomed.rf2torf1conversion.GraphLoader.loadRelationships(GraphLoader.java:23) at org.ihtsdo.snomed.rf2torf1conversion.ConversionManager.loadRelationshipHierarchy(ConversionManager.java:656) at org.ihtsdo.snomed.rf2torf1conversion.ConversionManager.doRf2toRf1Conversion(ConversionManager.java:298) at org.ihtsdo.snomed.rf2torf1conversion.ConversionManager.main(ConversionManager.java:204) Caused by: java.io.IOException: Unable to read file C:\Users\username\AppData\Local\Temp\1538062660686-0\sct2_Relationship_Snapshot_INT_20180901.txt at org.ihtsdo.snomed.rf2torf1conversion.GraphLoader.getFile(GraphLoader.java:61) at org.ihtsdo.snomed.rf2torf1conversion.GraphLoader.loadRelationshipFile(GraphLoader.java:31) ... 4 more
C:\SNOMEDCONV\rf2-to-rf1-conversion-master>
I'm trying to convert the 2018 US SNOMED dataset (SnomedCT_USEditionRF2_PRODUCTION_20180901T120000Z.zip), and I'm getting an exception at the 92% complete mark. I've tried this on 2 different machines with the same result. Thanks!
Exporting RF1 to file... 91.87% complete. Loading Inferred Relationship Hierarchy for Qualifying Relationship computation...
Process failed in 36.66 min after completing 407/443 operations. Relationship Ids not used. Cleaning up resources... 92.33% complete.Exception in thread "main" org.ihtsdo.snomed.rf2torf1conversion.RF1ConversionException: IO Exception while loading Relationship file: C:\Users\username\AppData\Local\Temp\1538062660686-0\sct2_Relationship_Snapshot_INT_20180901.txt at org.ihtsdo.snomed.rf2torf1conversion.GraphLoader.loadRelationshipFile(GraphLoader.java:52) at org.ihtsdo.snomed.rf2torf1conversion.GraphLoader.loadRelationships(GraphLoader.java:23) at org.ihtsdo.snomed.rf2torf1conversion.ConversionManager.loadRelationshipHierarchy(ConversionManager.java:656) at org.ihtsdo.snomed.rf2torf1conversion.ConversionManager.doRf2toRf1Conversion(ConversionManager.java:298) at org.ihtsdo.snomed.rf2torf1conversion.ConversionManager.main(ConversionManager.java:204) Caused by: java.io.IOException: Unable to read file C:\Users\username\AppData\Local\Temp\1538062660686-0\sct2_Relationship_Snapshot_INT_20180901.txt at org.ihtsdo.snomed.rf2torf1conversion.GraphLoader.getFile(GraphLoader.java:61) at org.ihtsdo.snomed.rf2torf1conversion.GraphLoader.loadRelationshipFile(GraphLoader.java:31) ... 4 more