Issue of "sequence did not exist, primed" in SNOMED_G tool

[aushikun]

Hello,

I am trying SNOMED_G tool, since I don't have a strong IT background and encountered the issue as below: I ran this command:

python ./prog/snomed_g_graphdb_build_tools.py db_build --action create --rf2 ./SCT_RF2_201801/ --release_type full --release_type full --neopw64 1234 --output_dir ./output/ --language_code 'en-us' --language_name 'USEnglish'

I got the reponse like this:

SNOMED_G bin directory [/Users/wangzhi/Program-test/Neo4j/Snomed_Neo/prog/] sequence did not exist, primed JOB_START FIND_ROLENAMES FAILED (steps: ['FIND_ROLENAMES'])

I am using:

1. Python2.7 and Py2neo 4.3.0 on a mac;
2. I wanted to try to convert the SNOMED CT of version 201801 to Neo4j format; build.log

I don't know how to solve this problem. Is there anyone who can help me? :)

[aushikun]

Hi everyone:

I got the reply from Jay and I have a directory of "./SCT_RF2_201801/Full/Terminology” and set the parameter like "--rf2 ./SCT_RF2_201801/Full/“. I also uninstalled py2neo 4.3.0 in python 2.7 and run “pip install py2neo==3.1.2” successfully.

And then, I ran the following command:

python ./prog/snomed_g_graphdb_build_tools.py db_build --action create --rf2 ./SCT_RF2_201801/Full/ --release_type full --neopw64 1234 --output_dir ./output --language_code 'en-us' --language_name ‘USEnglish'

I got the following error message:

SNOMED_G bin directory [/Users/wangzhi/Program-test/Neo4j/Snomed_Neo/prog/] Traceback (most recent call last): File "./prog/snomed_g_graphdb_build_tools.py", line 328, in parse_and_interpret(sys.argv[1:]) # causes sub-command processing to occur as well File "./prog/snomed_g_graphdb_build_tools.py", line 325, in parse_and_interpret command_interpreters[command_index]1 # call appropriate interpreter File "./prog/snomed_g_graphdb_build_tools.py", line 198, in db_build if opts.mode=='build': neo4j = snomed_g_lib_neo4j.Neo4j_Access(base64.decodestring(opts.neopw64)) File "/Users/wangzhi/Program-test/Neo4j/Snomed_Neo/prog/snomed_g_lib_neo4j.py", line 15, in init self.graph_db = py2neo.Graph(password=base64pw) # 'http://localhost:7474/db/data/transaction/commit' File "/Library/Python/2.7/site-packages/py2neo/database/init.py", line 327, in new use_bolt = version_tuple(inst.remote.get().content["neo4j_version"]) >= (3,) File "/Library/Python/2.7/site-packages/py2neo/database/http.py", line 151, in get headers = dict(self.headers, **(headers or {})) File "/Library/Python/2.7/site-packages/py2neo/database/http.py", line 110, in headers headers = get_http_headers(self.uri.scheme, self.uri.host, self.uri.port) File "/Library/Python/2.7/site-packages/py2neo/database/http.py", line 70, in get_http_headers uri_headers["Authorization"] = auth.http_authorization File "/Library/Python/2.7/site-packages/py2neo/database/auth.py", line 156, in http_authorization self.password).encode("UTF-8")).decode("ASCII") UnicodeDecodeError: 'ascii' codec can't decode byte 0xd7 in position 6: ordinal not in range(128)

I am not so familiar with python, I guess it might be the problem of unicode in the file of auth.py. I checked the log file, which is empty.

[kaicode]

Closing this issue as it's very old. Please reopen if it's still a problem.