Clear all data and start again. Also read-only mode question.

MahboobehJannesari commented 4 years ago

HI, I would like to remove all branches and start every thing from the first, How can I do?

I just imported RF2 version snapshot, then I imported RF2 Full version in the same way with import-full, but it give me error and previous version did not work. should I clear cache or ...?

kaicode commented 4 years ago

Hi @MahboobehJannesari, If you would like to remove all data and start a fresh the command line flag --delete-indices can be used. See loading-snomed / command-line. NOTE: Remember to remove the flag before starting Snowstorm the next time!

MahboobehJannesari commented 4 years ago

Hi, ok, another question When I start snowstorm as read-only I can not see the Import endpoint,why?

kaicode commented 4 years ago

The read-only flag is designed for Public instances where it is not possible to modify the content. You can either:

Start Snowstorm with read-only mode disabled until you have the content imported and then switch to read-only.
Or run two Snowstorm instances, the first for public use in read-only mode, the second instance behind a firewall in read-write mode, using the same Elasticsearch indices, for content imports. The second instance would only be needed occasionally.

MahboobehJannesari commented 4 years ago

I started to load snomed ct for second time with this command java -Xms4g -Xmx8g -jar snowstorm-4.12.1.jar --delete-indices --import=/home/ubuntu/Snapshot.zip

I got error:

2020-09-28 13:21:57.774 INFO 4281 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 01) by 2000 2020-09-28 13:21:57.776 ERROR 4281 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Failed to top-up IdCache(0 - 01) with 2000 identifiers java.lang.IllegalStateException: Request cannot be executed; I/O reactor status: STOPPED at org.apache.http.util.Asserts.check(Asserts.java:46) at org.apache.http.impl.nio.client.CloseableHttpAsyncClientBase.ensureRunning(CloseableHttpAsyncClientBase.java:90) at org.apache.http.impl.nio.client.InternalHttpAsyncClient.execute(InternalHttpAsyncClient.java:123) at org.elasticsearch.client.RestClient.performRequestAsync(RestClient.java:344) at org.elasticsearch.client.RestClient.performRequestAsync(RestClient.java:326) at org.elasticsearch.client.RestClient.performRequest(RestClient.java:219) at org.elasticsearch.client.RestClient.performRequest(RestClient.java:192) at org.elasticsearch.client.RestHighLevelClient.performRequest(RestHighLevelClient.java:428) at org.elasticsearch.client.RestHighLevelClient.performRequestAndParseEntity(RestHighLevelClient.java:414) at org.springframework.data.elasticsearch.rest.ESRestHighLevelClient.performRequestAndParseEntity(ESRestHighLevelClient.java:47) at org.elasticsearch.client.RestHighLevelClient.search(RestHighLevelClient.java:355) at org.springframework.data.elasticsearch.rest.ElasticsearchRestClient.doExecute(ElasticsearchRestClient.java:214) at org.elasticsearch.client.support.AbstractClient.execute(AbstractClient.java:405) at org.elasticsearch.client.support.AbstractClient.execute(AbstractClient.java:394) at org.elasticsearch.action.ActionRequestBuilder.execute(ActionRequestBuilder.java:46) at org.springframework.data.elasticsearch.core.ElasticsearchTemplate.doSearch(ElasticsearchTemplate.java:979) at org.springframework.data.elasticsearch.core.ElasticsearchTemplate.queryForPage(ElasticsearchTemplate.java:280) at org.springframework.data.elasticsearch.core.ElasticsearchTemplate.queryForPage(ElasticsearchTemplate.java:275) at org.springframework.data.elasticsearch.core.ElasticsearchTemplate.queryForList(ElasticsearchTemplate.java:302) at org.snomed.snowstorm.core.data.services.identifier.LocalRandomIdentifierSource.findExistingIdentifiersInAnyBranch(LocalRandomIdentifierSource.java:83) at org.snomed.snowstorm.core.data.services.identifier.LocalRandomIdentifierSource.reserveIds(LocalRandomIdentifierSource.java:61) at org.snomed.snowstorm.core.data.services.identifier.IdentifierCacheManager.topUp(IdentifierCacheManager.java:112) at org.snomed.snowstorm.core.data.services.identifier.IdentifierCacheManager.checkTopUpRequired(IdentifierCacheManager.java:95) at org.snomed.snowstorm.core.data.services.identifier.IdentifierCacheManager.run(IdentifierCacheManager.java:60) at java.lang.Thread.run(Thread.java:748) 2020-09-28 13:21:57.776 INFO 4281 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Topping up IdCache(0 - 02) by 4000 2020-09-28 13:21:57.779 ERROR 4281 --- [heManagerDaemon] o.s.s.c.d.s.i.IdentifierCacheManager : Failed to top-up IdCache(0 - 02) with 4000 identifiers java.lang.IllegalStateException: Request cannot be executed; I/O reactor status: STOPPED at org.apache.http.util.Asserts.check(Asserts.java:46)

IHTSDO / snowstorm

Clear all data and start again. Also read-only mode question. #162