Closed babysarojini closed 3 months ago
I'm not sure why Snowstorm accepted the TSV file. This is not a format it knows how to import. The import formats Snowstorm has been tested with are listed here: https://github.com/IHTSDO/snowstorm/blob/master/docs/using-the-fhir-api.md
Please download the official ICD-10-CM package in tabular xml format distributed as a zip file. The file is currently available here: https://www.cms.gov/medicare/coding-billing/icd-10-codes/2019-icd-10-cm
Then upload like this:
hapi-fhir-cli upload-terminology -d icd10cm_tabular_2019.zip -v r4 -t http://localhost:8080/fhir -u http://hl7.org/fhir/sid/icd-10-cm
I've just tested this and can confirm that 53,536 codes are imported.
The response to the lookup you mentioned will look like this:
{
"resourceType": "Parameters",
"parameter": [
{
"name": "system",
"valueString": "http://hl7.org/fhir/sid/icd-10-cm"
},
{
"name": "version",
"valueString": "2019"
},
{
"name": "display",
"valueString": "Cholera"
},
{
"name": "property",
"part": [
{
"name": "code",
"valueCode": "child"
},
{
"name": "value",
"valueCoding": {
"system": "http://hl7.org/fhir/sid/icd-10-cm",
"code": "A00.0",
"display": "Cholera due to Vibrio cholerae 01, biovar cholerae"
}
}
]
},
{
"name": "property",
"part": [
{
"name": "code",
"valueCode": "child"
},
{
"name": "value",
"valueCoding": {
"system": "http://hl7.org/fhir/sid/icd-10-cm",
"code": "A00.1",
"display": "Cholera due to Vibrio cholerae 01, biovar eltor"
}
}
]
},
{
"name": "property",
"part": [
{
"name": "code",
"valueCode": "child"
},
{
"name": "value",
"valueCoding": {
"system": "http://hl7.org/fhir/sid/icd-10-cm",
"code": "A00.9",
"display": "Cholera, unspecified"
}
}
]
}
]
}
thanks..did the same like above..but still not getting returning anything in lookup api, below are the steps..
hapi-fhir-cli upload-terminology -d icd10cm_tabular_2019.zip -v r4 -t http://localhost:8080/fhir -u http://hl7.org/fhir/sid/icd-10-cm
http://144.76.65.203:8080/fhir/CodeSystem
"entry": [
{
"fullUrl": "http://144.76.65.203:8080/fhir/CodeSystem/hl7.org-fhir-sid-icd-10",
"resource": {
"resourceType": "CodeSystem",
"id": "hl7.org-fhir-sid-icd-10",
"url": "http://hl7.org/fhir/sid/icd-10",
"status": "active",
"hierarchyMeaning": "is-a",
"compositional": false,
"content": "complete"
}
},
http://144.76.65.203:8080/fhir/CodeSystem/$lookup?system=http://hl7.org/fhir/sid/icd-10&code=A00
{ "resourceType": "OperationOutcome", "issue": [ { "severity": "error", "code": "not-found", "diagnostics": "Code 'A00' not found for system 'http://hl7.org/fhir/sid/icd-10'." } ] }
could you guide where i am doing wrong..
The correct system uri for this codesystem is http://hl7.org/fhir/sid/icd-10-cm
. That was used during the upload and should be used during the lookup.
http://localhost:8080/fhir/CodeSystem/$lookup?system=http://hl7.org/fhir/sid/icd-10-cm&code=A00
If you need to use a different system URI please use that when uploading.
got it thank you
Hi after uploading ICD-10-CM csv from https://github.com/Bobrovskiy/ICD-10-CSV/blob/master/2019/diagnosis.csv
we could see the code system updated as below after ./hapi-fhir-cli upload-terminology -d diagnosis.csv -v r4 -t http://localhost:8080/fhir -u http://hl7.org/fhir/sid/icd-10-cm
"entry": [ { "fullUrl": "http://144.76.65.203:8080/fhir/CodeSystem/hl7.org-fhir-sid-icd-10-cm", "resource": { "resourceType": "CodeSystem", "id": "hl7.org-fhir-sid-icd-10-cm", "url": "http://hl7.org/fhir/sid/icd-10-cm", "name": "ICD-10-CM", "status": "active", "hierarchyMeaning": "is-a", "compositional": false, "content": "complete" } },
but when i do API call to lookup a code..
http://144.76.65.203:8080/fhir/CodeSystem/$lookup?system=http://hl7.org/fhir/sid/icd-10-cm&code=A00
below is the response of "code": "not-found" { "resourceType": "OperationOutcome", "issue": [ { "severity": "error", "code": "not-found", "diagnostics": "Code 'A00' not found for system 'http://hl7.org/fhir/sid/icd-10-cm'." } ] }
Kindly help on is there any issue in above approach..