failed to install the packages

IMB-Computational-Genomics-Lab / ascend

R package - Analysis of Single Cell Expression, Normalisation and Differential expression (ascend)

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failed to install the packages #10

Closed MichaelPeibo closed 6 years ago

MichaelPeibo commented 6 years ago

Hi, I want to try your analysis pipeline, but I got a problem when I install the packages.

install_github("IMB-Computational-Genomics-Lab/ascend") Downloading GitHub repo IMB-Computational-Genomics-Lab/ascend@master from URL https://api.github.com/repos/IMB-Computational-Genomics-Lab/ascend/zipball/master Installation failed: transfer closed with outstanding read data remaining

MichaelPeibo commented 6 years ago

update ERROR: dependencies 'Biobase', 'BiocParallel', 'scater', 'scran', 'DESeq' are not available for package 'ascend'

removing 'D:/R-3.4.3/library/ascend' In R CMD INSTALL

MichaelPeibo commented 6 years ago

Update I installed the packages from bioconductor

biocLite(c( 'Biobase', 'BiocParallel', 'scran', 'DESeq','scater'))

Also,

Installation failed: transfer closed with outstanding read data remaining

probably due to the internet connection problem for the

I tried several times, it worked.