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INCATools / biosample-analysis

analysis of biosamples in INSDC
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Where did these folders come from? #60

Closed turbomam closed 7 months ago

turbomam commented 3 years ago

@wdduncan @cmungall

I have gensc.github.io/ in the root directory/master branch of INCATools/biosample-analysis. I think it had to do with some integration we were doing with mixs.yaml.

Same thing with queries/Script-1.sql. It looks like a pure SQL implementation of what I had done in in a notebook in the gold ontology repo. https://github.com/cmungall/gold-ontology/blob/main/notebooks/goldpaths_to_triads_by_proportion.ipynb

If they're considered "Untracked", could they have gotten into my file system from some other route than me creating them locally? Should I push them?

biosample-analysis % git status 
On branch master
Your branch is up to date with 'origin/master'.

Changes not staged for commit:
  (use "git add <file>..." to update what will be committed)
  (use "git restore <file>..." to discard changes in working directory)
    modified:   Makefile
    modified:   target/emp_studies.tsv
    modified:   util/save-harmonized-table-to-sqlite.py

Untracked files:
  (use "git add <file>..." to include in what will be committed)
    gensc.github.io/
    queries/
wdduncan commented 3 years ago

I have not idea what these files are. They don't appear locally on my computer either.