NER methods were run on an earlier version of the Biosample data, specifically for the Title and Description fields. This process used a simple TSV file with these fields source from the Biosample table:
biosample id
title
description
For the next iteration, it should be possible to have an additional piece of code as part of the NER pipeline to execute a basex query and output the results in the TSV format above for NER input.
NER methods were run on an earlier version of the Biosample data, specifically for the Title and Description fields. This process used a simple TSV file with these fields source from the Biosample table:
biosample id title description
For the next iteration, it should be possible to have an additional piece of code as part of the NER pipeline to execute a basex query and output the results in the TSV format above for NER input.
@hrshdhgd @turbomam