Home for curify_table, uri_to_curie, curie_to_uri, and irify_table?

[matentzn]

We frequently use these methods:

• curify_table: all/selected columns with IRIs should be replaced by curies
• irify_table: all/selected columns with curies should be replaced by IRIs
• uri_to_curie: a given uri is converted to a curie
• curie_to_uri: a given curie is converted to a curie

For the latter two we could go straight to bioregistry: https://bioregistry.readthedocs.io/en/latest/api/bioregistry.curie_from_iri.html?highlight=uri_to_curie

Or if we want to keep our dependencies clean implement intermediate utilities in OAK that defer to bioregistry for the implementations?

cc @joeflack4

[joeflack4]

+1: Thanks Nico!

[cthoyt]

in https://github.com/cthoyt/curies/pull/13 I added some bulk operation utilities to curies that work on files and pandas dataframes.

[joeflack4]

@matentzn Maybe this is something I don't need to worry about this time, but after this update is merged into OAK, I can update mondo-ingest my code further to do these conversions using the OAK class methods rather than imports and calls to curies directly.