INCATools / ontology-development-kit

Bootstrap an OBO Library ontology
http://incatools.github.io/ontology-development-kit/
BSD 3-Clause "New" or "Revised" License
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Revert "Update to newest owltools to align OWL API with ROBOT 1.9.6" #1075

Closed matentzn closed 3 months ago

matentzn commented 3 months ago

This reverts commit 716a6b6b9e8c6b5c05b834c6c3abb027df747912.

For now, it its better for the stability of pipelines that depend on owltools such as Mondo, Uberon to stick with the older version of owltools. These pipeline require to process owtools generated obo format for example with perl scripts and many other "ad hoc" scripts, and even small serialisation changes cause us problem now.

@balhoff we would prefer to freeze the owltools in time, and move everything to ROBOT now. Could you make an issue that shows the "garbage encountered in the GO pipeline" so we can think of a better solution for this?