Closed matentzn closed 1 year ago
Thanks for your attention to this @matentzn ! Were you able to test it out? Assuming it fixes the issue, is this something I can fix with update_repo
, or do I have to wait for the next ODK release or?
is this something I can fix with update_repo, or do I have to wait for the next ODK release
Both! You will need to run update_repo
to get the fix, but first you need to wait until the fix has made it into a release. For now the fix is only in the master
branch, running update_repo
would have no effect.
The update_repo
command does not get the latest stuff straight from the ODK repository. It only updates your own repository against the latest ODK image that is locally available in your Docker setup.
The fix is in :dev now: https://hub.docker.com/r/obolibrary/odkfull/tags!
@gouttegd thank your for your explanations. In the Repo @joeflack4 and I work on (not a real ontology pipeline), we use dev
image for everything because we constantly need the latest tools, makefile fixes etc.
As it turns out, having a general goal for files in the components directory was a mistake for various reasons (see https://github.com/monarch-initiative/mondo-ingest/pull/299; in a nutshell, you cant overwrite a wildcard goal in make with another more specific wildcard goal - only with a concrete goal without wildcards).
This PR should:
.owl
exists (i.e. other file formats are unaffected).cc @joeflack4