Running make update_repo can cause a permission denied error because the files in the temporary target directory were originally written by sudo. Delete the target dir before running fixes this.
If you get
ONTOLOGY STORAGE ERROR Could not save ontology to IRI: file:/work/src/ontology/tmp/hp-preprocess.owl
For details see: http://robot.obolibrary.org/errors#ontology-storage-error
Use the -vvv option to show the stack trace.
Use the --help option to see usage information.
make: *** [Makefile:301: tmp/hp-preprocess.owl] Error 1
This means you do not have your user settings correct.
make update_repo
can cause a permission denied error because the files in the temporarytarget
directory were originally written by sudo. Delete the target dir before running fixes this.This means you do not have your user settings correct.