no apt-get install equivalent for brew install jena in Ubuntu 20

INCATools / semantic-sql

SQL and SQLite builds of OWL ontologies

https://incatools.github.io/semantic-sql/

BSD 3-Clause "New" or "Revised" License

38 stars 3 forks source link

no apt-get install equivalent for brew install jena in Ubuntu 20 #13

Closed turbomam closed 2 years ago

turbomam commented 3 years ago

I installed semantic-sql and all of its dependencies on my LBL MacBook and then built an NCBItaxon rdftab database with entailment.

My scoped term mapper uses transitive closures over NCBItaxon subclasses for determining suitable target ontologies for records from the NCBI Biosample collection.

I'd to go through the semantic-sql steps on a fresh/different system so I can write it up as requirements for the scoped term mapper, but it looks like it's pretty Mac-centric at this point

cmungall commented 3 years ago

We can remove the jena requirement altogether if we can do https://github.com/balhoff/relation-graph/issues/25

I think this is only a couple of lines of scala code

turbomam commented 3 years ago

wget https://dlcdn.apache.org/jena/binaries/apache-jena-4.2.0.tar.gz
tar xzvf apache-jena-4.2.0.tar.gz 
export JENA_HOME=apache-jena-4.2.0
export PATH=$PATH:$JENA_HOME/bin