Closed wdduncan closed 3 months ago
No need to cc James, he doesn't maintain semantic-sql
The error happens when you run relation-graph
. It looks like you're running an older version that doesn't support --prefixes
or --output-individuals
.
You can check the version like this:
relation-graph --version
name: relation-graph-cli, version: 2.3.1, scalaVersion: 2.13.10, sbtVersion: 1.8.2, gitCommit: a5365567f712eff4f3454decb757b4c41504dbb8
Of course, it's annoying for to have to coordinate all these separate installs, the plan is to have everything be installable from PyPI:
But for now, make sure your relation-graph
is up to date, I'll update the docs
Thanks @cmungall :)
Works now!
I have created an mireot of the
kidney epithelial cell
branch from thecell ontology
. Here is therobot
command if interested:When I run
semsql make cl-mireot.db
, I receive the following errors which seem to be related to callingrelation-graph
:FWIW, I can use
rdftab
like so:cc @balhoff @jamesaoverton