Open balhoff opened 1 year ago
Even worse, there are tons of the same relations that are being duplicated with these crazy hash relations. I've been curating a list of ways to auto-upgrade these to the appropriate RO terms when possible (and making a normalized namespace DeBiO for everything else) here: https://github.com/biopragmatics/bioontologies/blob/main/src/bioontologies/upgrade/data.tsv
Most of these are accidents but not all. Maybe make a google spreadsheet and we map these to RO where an RO mapping exist, then make issues at the relevant ontologies to change their IRIs.
Linked issues:
One more linked issue from CL.
General ticket in Uberon:
A number of ontologies have properties with non-standard OBO identifier structures. These reduce integration in Ubergraph. Ideally all these would be either added to RO or given identifiers in their ontology namespaces. Some examples: