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INCATools / ubergraph

Integrated OBO ontology store
BSD 3-Clause "New" or "Revised" License
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consistency check is failing during OBI build #125

Closed balhoff closed 1 year ago

balhoff commented 1 year ago

@jamesaoverton it seems like the Ubergraph consistency check is failing while trying to build OBI, but I don't see any error output: https://github.com/INCATools/ubergraph/actions/runs/5300978907/jobs/9594900314

Do have an idea offhand what's going wrong?

jamesaoverton commented 1 year ago

I don't understand what's happening in that Make output. You're building an OBI base file?

balhoff commented 1 year ago

Yes, this is the script that's running: https://github.com/INCATools/ubergraph/blob/master/ci/test-merged.sh

balhoff commented 1 year ago

I think OBI was a red herring; it's the last thing in the script and the next step doesn't produce output unless there is an explain result. This problem resolved itself—I suspect this was actually caused by https://github.com/obophenotype/ncbitaxon/issues/76.