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INCATools / ubergraph

Integrated OBO ontology store
BSD 3-Clause "New" or "Revised" License
43 stars 3 forks source link

Add OBA to Ubergraph #96

Closed matentzn closed 2 years ago

matentzn commented 2 years ago

Plus the materialised links between OBA and phenotype ontologies.

matentzn commented 2 years ago

Do you object to this @balhoff

balhoff commented 2 years ago

Not at all.

balhoff commented 2 years ago

@matentzn which links are you referring to? Will that come from reasoning or do we need to load a file?

matentzn commented 2 years ago

Basically, in order to get all the OBA-HPO links, you need to materialise has-part (BFO:0000051). That will make sure that HPO:1 subclassOf BFO:0000051 some OBA:1!

balhoff commented 2 years ago

Okay, that will happen automatically!

balhoff commented 2 years ago

@matentzn oh it won't work, because all the HP logical definitions require 'has modifier' some abnormal.

matentzn commented 2 years ago

😱 Oh oh.. I must be making some fundamental mistake.. shoooooot.. This is what I was thinking:

image

Is this not correct? This does not bode well for my vision :D

balhoff commented 2 years ago

Aargh, you are totally right, I wasn't thinking straight.

balhoff commented 2 years ago

Yes check it out! https://api.triplydb.com/s/kBG-9b08U

matentzn commented 2 years ago

THIS IS TOO AMAZING!