INCEPTdk / omop_etl

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add cdm source transform #121

Closed daplaci closed 3 months ago

daplaci commented 3 months ago

closes #119

The CDM source is filled at the very beginning, so that if the ETL crashes and we do not realize we can still run the dqd

The transform logic was already implemented - I have suggested how to fill the field but @epiben I am sure you have better suggestions

Also we should check the COMMIT SHA env var is retained when running with singularity