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INSaFLU / docker

Easy installation for INSaFLU made by docker
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Prokka causing problem to insaflu #20

Closed muzzamil1234 closed 1 year ago

muzzamil1234 commented 1 year ago

i am getting this error, while running insaflu using docker.

nsaflu-server | Running migrations: insaflu-server | No migrations to apply. insaflu-server | ---> Load default files ... insaflu-server | ---> Set prokka default databases ... insaflu-server | "uniq" is not exported by the List::Util module insaflu-server | Can't continue after import errors at /software/prokka/bin/prokka line 31. insaflu-server | BEGIN failed--compilation aborted at /software/prokka/bin/prokka line 31. insaflu-server exited with code 0

dsobral commented 1 year ago

Hello,

I never had that error, and I very recently did a fresh build.

Somehow the Perl that gets installed is a different version (possibly older) than what it should be for prokka. I'll try to see if I can force a certain repository that always guarantees that the correct version is installed.

We're also aiming to provide a self-contained pre-built image as soon as possible. This should obviate the need to build from scratch every time.

Best, Daniel

muzzamil1234 commented 1 year ago

Thanks.