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INTABiotechMJ / MITE-Tracker

MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes
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filter blastn output #7

Closed bioteksampath closed 5 years ago

bioteksampath commented 5 years ago

Hi, This tool seems very interesting, thanks for developing it.

I could follow until blastn of candidates MITEs with the genome fasta sequence. I have the blast_families_ata.csv file. But I am not clear how to filter the blast output to create gff.

''' Let's run out notebook for filtering blast results, run till the end. This will explain at each step how filtering is done and what are the results.

jupyter lab

''''

Plz clarify Thanks in advance. sam

juancresc commented 5 years ago

Yes, when opening Jupyer lab, open _filterblast.ipynb

bioteksampath commented 5 years ago

Thanks... But I have a problem installing Jupiter lab. will get back to you if not works?

juancresc commented 5 years ago

what problem is it?