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IOMRC / gentleR-n-Pyceful

Repository for weekly meeting of IOMRC people learning Python and R
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Weekly Meeting #1

Open pbranson opened 5 years ago

pbranson commented 5 years ago

This issue is for discussion about planning our weekly meetings and themes.

The format of the meetings will likely evolve, however some structure will help keep the meetings on track and on schedule.

The only principle is that themes for subsequent weeks will be decided from the quorum at a meeting (i.e. you have to be at the meeting to have a say!)

dirkslawinski commented 5 years ago

March-12-2019 This week I (Dirk Slawinski) will cover the list of links we are gathering for the group and asking others to contribute.

I'll also demo some basic online map making using "Shiny" which I've set up for some projects.

We'll also start a discussion on map making in R that will set the stage for a more in depth discussion in the future.

HayleaMiller commented 5 years ago

Cheers, What time where the meetings again? I’ve already forgotten ha

dirkslawinski commented 5 years ago

10:30

A-K-Cresswell commented 5 years ago

It would be good if in a meeting soon someone could go through some github basics as I am just learning how it works.

Cheers, Anna

HayleaMiller commented 5 years ago

Cheers

HayleaMiller commented 5 years ago

I agree

dirkslawinski commented 5 years ago

OK, Perhaps Paul can give a rundown as one can work with it in several ways/levels.

beckyfisher commented 5 years ago

Happy to do a quick RStudio centric demo at some point

pbranson commented 5 years ago

Yep good idea - will see if I can pull together some resources.

At the moment we are primarily just using it for discussion/coordination of the meeting and capturing details on a platform that is accessible to everyone.

So I wouldn't worry too much about understanding how to use it initially, from a source code versioning / control perspective. The version control side can seem intimidating as there are a number of concepts that are typically pretty foreign to scientists who havent had software development experience!

Having said that, it can be a a useful tool - a topic for us to discuss tomorrow possibly for the next meeting!

dirkslawinski commented 5 years ago

I was planning on giving a quick teaser tomorrow as part of the shiny demo …. See my post for the meeting

beckyfisher commented 5 years ago

Sorry Dirk, I made the classic mistake of responding to my inbox in reverse chronological order….

beckyfisher commented 5 years ago

Apologies in advance group, I am very unwell this week and away next week.

pbranson commented 5 years ago

No worries Becky!

As discussed last week I will be giving an introduction to git usage for scientists.

ghost commented 5 years ago

Hi guys,

we are meeting in Room 4.02 today as there is a conflicting booking (with our booking time) for the Ocean Works space once a month. If we don't want to contend with this clash, we can change our meeting day (Mondays, Wednesday and Fridays morning or afternoons on any day are free booking wise) or we can stick with Tuesdays morning and meet somewhere else once a month. So please let me know works for you! Hope you're feeling better soon Becky.

beckyfisher commented 5 years ago

bummer! If it is relevant to the meeting discussion I would vote for Friday lunchtime... or if everyone still insists we avoid lunch, perhaps later in the afternoon.

ghost commented 5 years ago

Hi all,

There is a meeting clash for CSIRO folks today as we have an all staff meeting at 11 and the Ocean works space is also booked from 10:30-11:30 so we could reschedule for this afternoon? or those who can make it at 10:30 will need to find another meeting space.

dirkslawinski commented 5 years ago

But not at 3:30 … and if before … remember to take your laptop because … well you may want it (and your phone +/- "walkable" items) in hand at 3:30

From: lucymerobinson notifications@github.com Reply-To: IOMRC/gentleR-n-Pyceful reply@reply.github.com Date: Tuesday, 26 March 2019 at 8:49 am To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: "Slawinski, Dirk (CMAR, Floreat)" Dirk.Slawinski@csiro.au, Comment comment@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Hi all,

There is a meeting clash for CSIRO folks today as we have an all staff meeting at 11 and the Ocean works space is also booked from 10:30-11:30 so we could reschedule for this afternoon? or those who can make it at 10:30 will need to find another meeting space.

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pbranson commented 5 years ago

Im not going to make it due to said all staff meeting too - let us know if a time change happens, otherwise have a good meeting!

ghost commented 5 years ago

It sounds like we are postponing this weeks meeting so I look fwd to catching everyone next Tuesday.

ghost commented 5 years ago

Hi guys, we are meeting downstairs on Floor 1 in the OceanWorks meeting room at 10:30 for those who can make it!

pbranson commented 5 years ago

Sorry! cant make it today

On Tue, Apr 2, 2019 at 10:09 AM lucymerobinson notifications@github.com wrote:

Hi guys, we are meeting downstairs on Floor 1 in the OceanWorks meeting room at 10:30 for those who can make it!

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A-K-Cresswell commented 5 years ago

Sorry I didn't make it today either. I did want to raise the subject of whether we can invite some non-IOMRC people. I think my supervisor Michael Renton (ecological modelling, UWA) and a student currently visiting the UWA school of Biological Sciences from University of Edinburgh (studying global changes in biodiversity) would be interested in our group. Let me know. There are probably some other students in Michael's modelling group that may be interested too Thanks, Anna

On Tue, Apr 2, 2019 at 10:15 AM Paul Branson notifications@github.com wrote:

Sorry! cant make it today

On Tue, Apr 2, 2019 at 10:09 AM lucymerobinson notifications@github.com wrote:

Hi guys, we are meeting downstairs on Floor 1 in the OceanWorks meeting room at 10:30 for those who can make it!

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joannastrzelecki commented 5 years ago

Hi All, Sorry, I am in a workshop today, Joanna

From: Anna Cresswell [mailto:notifications@github.com] Sent: Tuesday, 2 April 2019 11:12 AM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: Strzelecki, Joanna (O&A, IOMRC Crawley) Joanna.Strzelecki@csiro.au; Manual manual@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Sorry I didn't make it today either. I did want to raise the subject of whether we can invite some non-IOMRC people. I think my supervisor Michael Renton (ecological modelling, UWA) and a student currently visiting the UWA school of Biological Sciences from University of Edinburgh (studying global changes in biodiversity) would be interested in our group. Let me know. There are probably some other students in Michael's modelling group that may be interested too Thanks, Anna

On Tue, Apr 2, 2019 at 10:15 AM Paul Branson notifications@github.com<mailto:notifications@github.com> wrote:

Sorry! cant make it today

On Tue, Apr 2, 2019 at 10:09 AM lucymerobinson notifications@github.com<mailto:notifications@github.com> wrote:

Hi guys, we are meeting downstairs on Floor 1 in the OceanWorks meeting room at 10:30 for those who can make it!

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub < https://github.com/IOMRC/gentleR-n-Pyceful/issues/1#issuecomment-478815510 , or mute the thread < https://github.com/notifications/unsubscribe-auth/AM3bQJoewClmSP4JmTGKOCwegJliZtB7ks5vcrvigaJpZM4bdvNw

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beckyfisher commented 5 years ago

Apologies also, being sick/away for the last two weeks has resulted in some chaos I need to deal with… I’d be very keen to see this made a bit wider, and certainly Michael Renton and co would have much value to add I am sure. I still haven’t managed to invite the broader AIMS community, but do intend too…

From: Anna Cresswell [mailto:notifications@github.com] Sent: Tuesday, 2 April 2019 11:12 AM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: Rebecca Fisher R.Fisher@aims.gov.au; Manual manual@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Sorry I didn't make it today either. I did want to raise the subject of whether we can invite some non-IOMRC people. I think my supervisor Michael Renton (ecological modelling, UWA) and a student currently visiting the UWA school of Biological Sciences from University of Edinburgh (studying global changes in biodiversity) would be interested in our group. Let me know. There are probably some other students in Michael's modelling group that may be interested too Thanks, Anna

On Tue, Apr 2, 2019 at 10:15 AM Paul Branson notifications@github.com<mailto:notifications@github.com> wrote:

Sorry! cant make it today

On Tue, Apr 2, 2019 at 10:09 AM lucymerobinson notifications@github.com<mailto:notifications@github.com> wrote:

Hi guys, we are meeting downstairs on Floor 1 in the OceanWorks meeting room at 10:30 for those who can make it!

— You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub < https://github.com/IOMRC/gentleR-n-Pyceful/issues/1#issuecomment-478815510 , or mute the thread < https://github.com/notifications/unsubscribe-auth/AM3bQJoewClmSP4JmTGKOCwegJliZtB7ks5vcrvigaJpZM4bdvNw

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ghost commented 5 years ago

It was a small but enthusiastic group this morning! Between us we identified 2 discussion topics for next week. Topic 1 is producing publication quality maps in R and/or Python (@dirkslawinski put up his hand to facilitate this one) and Topic 2 is machine learning which Ben Mayne has kindly agreed to facilitate, but given Ben isn't here next week, do you mind facilitating Topic 1 next week Dirk? And perhaps we recruit Ben for the following week? or we discuss this at next weeks meeting? I'm all for inviting Non-IOMRC people to join us @A-K-Cresswell & @beckyfisher. I don't see why we shouldn't expand the invite, but happy to hear others thoughts on this??

dirkslawinski commented 5 years ago

no worries

From: lucymerobinson notifications@github.com Reply-To: IOMRC/gentleR-n-Pyceful reply@reply.github.com Date: Tuesday, 2 April 2019 at 2:19 pm To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: "Slawinski, Dirk (CMAR, Floreat)" Dirk.Slawinski@csiro.au, Mention mention@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

It was a small but enthusiastic group this morning! Between us we identified 2 discussion topics for next week. Topic 1 is producing publication quality maps in R and/or Python (@dirkslawinskihttps://github.com/dirkslawinski put up his hand to facilitate this one) and Topic 2 is machine learning which Ben Mayne has kindly agreed to facilitate, but given Ben isn't here next week, do you mind facilitating Topic 1 next week Dirk? And perhaps we recruit Ben for the following week? or we discuss this at next weeks meeting? I'm all for inviting Non-IOMRC people to join us @A-K-Cresswellhttps://github.com/A-K-Cresswell & @beckyfisherhttps://github.com/beckyfisher. I don't see why we shouldn't expand the invite, but happy to hear others thoughts on this??

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ghost commented 5 years ago

Hi all, FYI the Oceanworks space is booked from 10:30-11:30 for those who can make it today. Unfortunately I can't make it today (or for the next few weeks).

HayleaMiller commented 5 years ago

So should we cancel it for this week?

From: lucymerobinson [mailto:notifications@github.com] Sent: Tuesday, 16 April 2019 9:41 AM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: Miller, Haylea (NCMI, IOMRC Crawley) Haylea.Miller@csiro.au; Manual manual@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Hi all, FYI the Oceanworks space is booked from 10:30-11:30 for those who can make it today. Unfortunately I can't make it today (or for the next few weeks).

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HayleaMiller commented 5 years ago

Is there a meeting today? Or are most people on leave.

dirkslawinski commented 5 years ago

a useful ggplot post on r-bloggers:

https://www.r-bloggers.com/a-detailed-guide-to-the-ggplot-scatter-plot-in-r/

HayleaMiller commented 5 years ago

Is there a meeting today? Or are people still on leave or away for work?

dirkslawinski commented 5 years ago

good question

From: HayleaMiller notifications@github.com Reply-To: IOMRC/gentleR-n-Pyceful reply@reply.github.com Date: Tuesday, 30 April 2019 at 9:44 am To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: "Slawinski, Dirk (CMAR, Floreat)" Dirk.Slawinski@csiro.au, Mention mention@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Is there a meeting today? Or are people still on leave or away for work?

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ghost commented 5 years ago

I'm happy to meet. The Ocean works space isn't free today so I've booked room 4.21 on floor 4 for those who are keen to come along.

HayleaMiller commented 5 years ago

Hey everyone, Ben can do the machine learning chat next Tuesday at 1pm, hows that time for everyone?

beckyfisher commented 5 years ago

Sounds good!

From: HayleaMiller [mailto:notifications@github.com] Sent: Tuesday, 30 April 2019 12:16 PM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: Rebecca Fisher R.Fisher@aims.gov.au; Mention mention@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Hey everyone, Ben can do the machine learning chat next Tuesday at 1pm, hows that time for everyone?

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joannastrzelecki commented 5 years ago

Works for me, Thank you, Joanna

From: Rebecca Fisher [mailto:notifications@github.com] Sent: Tuesday, 30 April 2019 12:42 PM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: Strzelecki, Joanna (O&A, IOMRC Crawley) Joanna.Strzelecki@csiro.au; Manual manual@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Sounds good!

From: HayleaMiller [mailto:notifications@github.com] Sent: Tuesday, 30 April 2019 12:16 PM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: Rebecca Fisher R.Fisher@aims.gov.au; Mention mention@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Hey everyone, Ben can do the machine learning chat next Tuesday at 1pm, hows that time for everyone?

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ghost commented 5 years ago

Sounds good Haylea, thanks for confirming with Ben that he can give a talk on machine learning next week. I've just changed our 10:30-11:30 booking from 12-1 and after chatting with you and Ben we've confirmed that time suits you guys so hopefully it also suits others. For those who weren't in the meeting today we discussed changing our regular meeting time given the monthly clash with another meeting in that space and there was general support to move it to 12-1 from now on so hopefully that's cool with everyone (including those who couldn't make it today). Also we identified a number of topics of interest for future meeting including multiple regression analysis and Beckys FSSgam R package, expert elicitation of quantitative data linked to another R package developed by Becky and I'm happy to facilitate a session on doing Academic literature searches and analyses in R and generating ideas for new keyword searches using google trends (also in R) and please let me know if I missed anything!

dirkslawinski commented 5 years ago

yay

From: lucymerobinson notifications@github.com Reply-To: IOMRC/gentleR-n-Pyceful reply@reply.github.com Date: Tuesday, 30 April 2019 at 12:50 pm To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: "Slawinski, Dirk (CMAR, Floreat)" Dirk.Slawinski@csiro.au, Mention mention@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Sounds good Haylea, thanks for confirming with Ben that he can give a talk on machine learning next week. I've just changed our 10:30-11:30 booking from 12-1 and after chatting with you and Ben we've confirmed that time suits you guys so hopefully it also suits others. For those who weren't in the meeting today we discussed changing our regular meeting time given the monthly clash with another meeting in that space and there was general support to move it to 12-1 from now on so hopefully that's cool with everyone (including those who couldn't make it today). Also we identified a number of topics of interest for future meeting including multiple regression analysis and Beckys FSSgam R package, expert elicitation of quantitative data linked to another R package developed by Becky and I'm happy to facilitate a session on doing Academic literature searches and analyses in R and generating ideas for new keyword searches using google trends (also in R) and please let me know if I missed anything!

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beckyfisher commented 5 years ago

Apologies for next week, I cannot attend as I have other meetings all day.

ghost commented 5 years ago

Quite a few people can't make it this week so we have rescheduled Ben's talk to Tuesday next week (May 14). For those who are around we will just have a standard meeting downstairs at lunchtime.

ghost commented 5 years ago

Sorry guys, but I won’t be able to join you today either.

Sent from my iPhone

On 6 May 2019, at 10:45 am, lucymerobinson notifications@github.com wrote:

Quite a few people can't make it this week so we have rescheduled Ben's talk to Tuesday next week (May 14). For those who are around we will just have a standard meeting downstairs at lunchtime.

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ghost commented 5 years ago

Hey all, we are postponing Bens talk until next Tuesday as something has come up for him and a few people who are keen to see his talk are away. So for those who are around and would like to meet, see you in the Ocean works space at 12.

ghost commented 5 years ago

Hey all, sorry for the slightly late notice, but Ben Mayne will be facilitating a session on machine learning methods in R today so see you down stairs at 12!

beckyfisher commented 5 years ago

Sorry guys, wont make it this week.

joannastrzelecki commented 5 years ago

Apologies, I am on a workshop all day today

From: Rebecca Fisher [mailto:notifications@github.com] Sent: Tuesday, 28 May 2019 8:51 AM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: Strzelecki, Joanna (O&A, IOMRC Crawley) Joanna.Strzelecki@csiro.au; Manual manual@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Sorry guys, wont make it this week.

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pbranson commented 5 years ago

Likewise, not going to make it sorry

On Tue, May 28, 2019 at 9:00 AM joannastrzelecki notifications@github.com wrote:

Apologies, I am on a workshop all day today

From: Rebecca Fisher [mailto:notifications@github.com] Sent: Tuesday, 28 May 2019 8:51 AM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: Strzelecki, Joanna (O&A, IOMRC Crawley) Joanna.Strzelecki@csiro.au; Manual manual@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Sorry guys, wont make it this week.

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ghost commented 5 years ago

I am an apology today too but @Nick.Mortimer@csiro.au Nick.Mortimer@csiro.au will be giving a talk on xarray (for loading netCDF files) and binder in python. Nick says you should bring your laptop so you can join in the fun.

On Tue, May 28, 2019 at 9:00 AM joannastrzelecki notifications@github.com wrote:

Apologies, I am on a workshop all day today

From: Rebecca Fisher [mailto:notifications@github.com] Sent: Tuesday, 28 May 2019 8:51 AM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: Strzelecki, Joanna (O&A, IOMRC Crawley) Joanna.Strzelecki@csiro.au; Manual manual@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Sorry guys, wont make it this week.

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A-K-Cresswell commented 5 years ago

I'll be there today! Then away again for a couple of weeks. Cheers, Anna

On Tue, May 28, 2019 at 10:15 AM lucymerobinson notifications@github.com wrote:

I am an apology today too but @Nick.Mortimer@csiro.au Nick.Mortimer@csiro.au will be giving a talk on xarray (for loading netCDF files) and binder in python. Nick says you should bring your laptop so you can join in the fun.

On Tue, May 28, 2019 at 9:00 AM joannastrzelecki <notifications@github.com

wrote:

Apologies, I am on a workshop all day today

From: Rebecca Fisher [mailto:notifications@github.com] Sent: Tuesday, 28 May 2019 8:51 AM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: Strzelecki, Joanna (O&A, IOMRC Crawley) <Joanna.Strzelecki@csiro.au ; Manual manual@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Sorry guys, wont make it this week.

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mrayson commented 5 years ago

Hi all,

I have been on leave and am new to these meetings. What is the usual time and place?

cheers,

Matt

On Tue, May 28, 2019 at 11:24 AM Anna Cresswell notifications@github.com wrote:

I'll be there today! Then away again for a couple of weeks. Cheers, Anna

On Tue, May 28, 2019 at 10:15 AM lucymerobinson notifications@github.com wrote:

I am an apology today too but @Nick.Mortimer@csiro.au Nick.Mortimer@csiro.au will be giving a talk on xarray (for loading netCDF files) and binder in python. Nick says you should bring your laptop so you can join in the fun.

On Tue, May 28, 2019 at 9:00 AM joannastrzelecki < notifications@github.com

wrote:

Apologies, I am on a workshop all day today

From: Rebecca Fisher [mailto:notifications@github.com] Sent: Tuesday, 28 May 2019 8:51 AM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: Strzelecki, Joanna (O&A, IOMRC Crawley) <Joanna.Strzelecki@csiro.au ; Manual manual@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Sorry guys, wont make it this week.

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Ph: +61 8 6488 3083

HayleaMiller commented 5 years ago

Hi Matt, There at 12pm on Tuesday’s and are usually held in the Woodside lounge on floor 1 unless told otherwise.

From: mrayson [mailto:notifications@github.com] Sent: Tuesday, 28 May 2019 11:32 AM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com Cc: Miller, Haylea (NCMI, IOMRC Crawley) Haylea.Miller@csiro.au; Manual manual@noreply.github.com Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Hi all,

I have been on leave and am new to these meetings. What is the usual time and place?

cheers,

Matt

On Tue, May 28, 2019 at 11:24 AM Anna Cresswell notifications@github.com<mailto:notifications@github.com> wrote:

I'll be there today! Then away again for a couple of weeks. Cheers, Anna

On Tue, May 28, 2019 at 10:15 AM lucymerobinson notifications@github.com<mailto:notifications@github.com> wrote:

I am an apology today too but @Nick.Mortimer@csiro.au Nick.Mortimer@csiro.au<mailto:Nick.Mortimer@csiro.au> will be giving a talk on xarray (for loading netCDF files) and binder in python. Nick says you should bring your laptop so you can join in the fun.

On Tue, May 28, 2019 at 9:00 AM joannastrzelecki < notifications@github.commailto:notifications@github.com

wrote:

Apologies, I am on a workshop all day today

From: Rebecca Fisher [mailto:notifications@github.com] Sent: Tuesday, 28 May 2019 8:51 AM To: IOMRC/gentleR-n-Pyceful gentleR-n-Pyceful@noreply.github.com<mailto:gentleR-n-Pyceful@noreply.github.com> Cc: Strzelecki, Joanna (O&A, IOMRC Crawley) <Joanna.Strzelecki@csiro.au mailto:Joanna.Strzelecki@csiro.au%0b> > >; Manual manual@noreply.github.com<mailto:manual@noreply.github.com> Subject: Re: [IOMRC/gentleR-n-Pyceful] Weekly Meeting (#1)

Sorry guys, wont make it this week.

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