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Adding external vocabularies failed in the recent version 5.7 #8214

Closed sergejzr closed 2 years ago

sergejzr commented 2 years ago

What steps does it take to reproduce the issue?

(1) Installed the most recent version 5.7 on a fresh server (2) Followed the steps to include external vocabularies as described in: https://guides.dataverse.org/en/latest/installation/config.html#cvocconf (3) Installed the metqadatblock cvocdemo.tsv

more exactly:

$ wget https://gdcc.github.io/dataverse-external-vocab-support/examples/config/cvoc-conf.json $ curl -X PUT --upload-file cvoc-conf.json http://localhost:8080/api/admin/settings/:CVocConf $ wget https://raw.githubusercontent.com/gdcc/dataverse-external-vocab-support/main/examples/metadatablocks/cvocdemo.tsv $ curl http://localhost:8080/api/admin/datasetfield/load -H "Content-type: text/tab-separated-values" -X POST --upload-file cvocdemo.tsv `

Dataverse can not be accessed due to "HTTP Status 500 - Internal Server Error" ` descriptionThe server encountered an internal error that prevented it from fulfilling this request.

exception

javax.servlet.ServletException root cause

javax.ejb.EJBException root cause

java.lang.NullPointerException `

The server.log tells:

` [2021-11-04T14:32:08.647+0100] [Payara 5.2021.5] [WARNING] [] [edu.harvard.iq.dataverse.DatasetFieldServiceBean] [tid: _ThreadID=73 _ThreadName=http-thread-pool::http-listener-1(5)] [timeMillis: 1636032728647] [levelValue: 900] [[ Ignoring External Vocabulary setting for non-existent field: cvocDemo]]

[2021-11-04T14:32:08.648+0100] [Payara 5.2021.5] [WARNING] [AS-EJB-00056] [javax.enterprise.ejb.container] [tid: _ThreadID=73 _ThreadName=http-thread-pool::http-listener-1(5)] [timeMillis: 1636032728648] [levelValue: 900] [[ A system exception occurred during an invocation on EJB DatasetFieldServiceBean, method: public java.util.Map edu.harvard.iq.dataverse.DatasetFieldServiceBean.getCVocConf(boolean)]]

[2021-11-04T14:32:08.648+0100] [Payara 5.2021.5] [WARNING] [] [javax.enterprise.ejb.container] [tid: _ThreadID=73 _ThreadName=http-thread-pool::http-listener-1(5)] [timeMillis: 1636032728648] [levelValue: 900] [[

javax.ejb.EJBException at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:723) at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:652) at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:482) at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4592) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2125) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2095) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90) at com.sun.proxy.$Proxy320.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.__EJB31_GeneratedDatasetFieldServiceBeanIntf__Bean.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.DatasetPage.getCVocConf(DatasetPage.java:5538) at jdk.internal.reflect.GeneratedMethodAccessor517.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at javax.el.ELUtil.invokeMethod(ELUtil.java:239) at javax.el.BeanELResolver.invoke(BeanELResolver.java:440) at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:198) at com.sun.el.parser.AstValue.getValue(AstValue.java:110) at com.sun.el.parser.AstValue.getValue(AstValue.java:177) at com.sun.el.parser.AstGreaterThan.getValue(AstGreaterThan.java:34) at com.sun.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:184) at org.jboss.weld.module.web.el.WeldValueExpression.getValue(WeldValueExpression.java:50) at com.sun.faces.facelets.el.TagValueExpression.getValue(TagValueExpression.java:73) at javax.faces.component.ComponentStateHelper.eval(ComponentStateHelper.java:170) at javax.faces.component.UIComponentBase.isRendered(UIComponentBase.java:313) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1640) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at com.sun.faces.application.view.FaceletViewHandlingStrategy.renderView(FaceletViewHandlingStrategy.java:468) at com.sun.faces.application.view.MultiViewHandler.renderView(MultiViewHandler.java:170) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at org.omnifaces.viewhandler.OmniViewHandler.renderView(OmniViewHandler.java:121) at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:102) at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:76) at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:199) at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:708) at javax.faces.webapp.FacesServlet.service(FacesServlet.java:451) at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:282) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:161) at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577) at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158) at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:371) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238) at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549) at java.base/java.lang.Thread.run(Thread.java:829) Caused by: java.lang.NullPointerException at edu.harvard.iq.dataverse.DatasetFieldServiceBean.getCVocConf(DatasetFieldServiceBean.java:303) at jdk.internal.reflect.GeneratedMethodAccessor612.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4826) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at jdk.internal.reflect.GeneratedMethodAccessor272.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72) at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at jdk.internal.reflect.GeneratedMethodAccessor269.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375) at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4798) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4786) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) ... 68 more ]]

[2021-11-04T14:32:08.649+0100] [Payara 5.2021.5] [SEVERE] [] [javax.enterprise.resource.webcontainer.jsf.application] [tid: _ThreadID=73 _ThreadName=http-thread-pool::http-listener-1(5)] [timeMillis: 1636032728649] [levelValue: 1000] [[ Error Rendering View[/loginpage.xhtml] javax.el.ELException: /dataverse_template.xhtml @89,73 rendered="#{DatasetPage.getCVocConf().size() > 0}": javax.ejb.EJBException at com.sun.faces.facelets.el.TagValueExpression.getValue(TagValueExpression.java:77) at javax.faces.component.ComponentStateHelper.eval(ComponentStateHelper.java:170) at javax.faces.component.UIComponentBase.isRendered(UIComponentBase.java:313) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1640) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at com.sun.faces.application.view.FaceletViewHandlingStrategy.renderView(FaceletViewHandlingStrategy.java:468) at com.sun.faces.application.view.MultiViewHandler.renderView(MultiViewHandler.java:170) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at org.omnifaces.viewhandler.OmniViewHandler.renderView(OmniViewHandler.java:121) at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:102) at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:76) at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:199) at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:708) at javax.faces.webapp.FacesServlet.service(FacesServlet.java:451) at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:282) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:161) at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577) at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158) at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:371) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238) at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549) at java.base/java.lang.Thread.run(Thread.java:829) Caused by: javax.el.ELException: javax.ejb.EJBException at javax.el.ELUtil.invokeMethod(ELUtil.java:245) at javax.el.BeanELResolver.invoke(BeanELResolver.java:440) at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:198) at com.sun.el.parser.AstValue.getValue(AstValue.java:110) at com.sun.el.parser.AstValue.getValue(AstValue.java:177) at com.sun.el.parser.AstGreaterThan.getValue(AstGreaterThan.java:34) at com.sun.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:184) at org.jboss.weld.module.web.el.WeldValueExpression.getValue(WeldValueExpression.java:50) at com.sun.faces.facelets.el.TagValueExpression.getValue(TagValueExpression.java:73) ... 52 more Caused by: javax.ejb.EJBException at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:723) at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:652) at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:482) at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4592) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2125) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2095) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90) at com.sun.proxy.$Proxy320.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.__EJB31_GeneratedDatasetFieldServiceBeanIntf__Bean.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.DatasetPage.getCVocConf(DatasetPage.java:5538) at jdk.internal.reflect.GeneratedMethodAccessor517.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at javax.el.ELUtil.invokeMethod(ELUtil.java:239) ... 60 more Caused by: java.lang.NullPointerException at edu.harvard.iq.dataverse.DatasetFieldServiceBean.getCVocConf(DatasetFieldServiceBean.java:303) at jdk.internal.reflect.GeneratedMethodAccessor612.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4826) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at jdk.internal.reflect.GeneratedMethodAccessor272.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72) at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at jdk.internal.reflect.GeneratedMethodAccessor269.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375) at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4798) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4786) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) ... 68 more ]]

[2021-11-04T14:32:08.649+0100] [Payara 5.2021.5] [WARNING] [] [javax.enterprise.web] [tid: _ThreadID=73 _ThreadName=http-thread-pool::http-listener-1(5)] [timeMillis: 1636032728649] [levelValue: 900] [[ StandardWrapperValve[Faces Servlet]: Servlet.service() for servlet Faces Servlet threw exception java.lang.NullPointerException at edu.harvard.iq.dataverse.DatasetFieldServiceBean.getCVocConf(DatasetFieldServiceBean.java:303) at jdk.internal.reflect.GeneratedMethodAccessor612.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4826) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at jdk.internal.reflect.GeneratedMethodAccessor272.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72) at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at jdk.internal.reflect.GeneratedMethodAccessor269.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4798) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4786) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90) at com.sun.proxy.$Proxy320.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.EJB31_GeneratedDatasetFieldServiceBeanIntf__Bean.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.DatasetPage.getCVocConf(DatasetPage.java:5538) at jdk.internal.reflect.GeneratedMethodAccessor517.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at javax.el.ELUtil.invokeMethod(ELUtil.java:239) at javax.el.BeanELResolver.invoke(BeanELResolver.java:440) at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:198) at com.sun.el.parser.AstValue.getValue(AstValue.java:110) at com.sun.el.parser.AstValue.getValue(AstValue.java:177) at com.sun.el.parser.AstGreaterThan.getValue(AstGreaterThan.java:34) at com.sun.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:184) at org.jboss.weld.module.web.el.WeldValueExpression.getValue(WeldValueExpression.java:50) at com.sun.faces.facelets.el.TagValueExpression.getValue(TagValueExpression.java:73) at javax.faces.component.ComponentStateHelper.eval(ComponentStateHelper.java:170) at javax.faces.component.UIComponentBase.isRendered(UIComponentBase.java:313) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1640) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at com.sun.faces.application.view.FaceletViewHandlingStrategy.renderView(FaceletViewHandlingStrategy.java:468) at com.sun.faces.application.view.MultiViewHandler.renderView(MultiViewHandler.java:170) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at org.omnifaces.viewhandler.OmniViewHandler.renderView(OmniViewHandler.java:121) at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:102) at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:76) at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:199) at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:708) at javax.faces.webapp.FacesServlet.service(FacesServlet.java:451) at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.glassfish.tyrus.servlet.TyrusServletFilter.doFilter(TyrusServletFilter.java:282) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.apache.catalina.core.StandardWrapperValve.invoke(StandardWrapperValve.java:257) at org.apache.catalina.core.StandardContextValve.invoke(StandardContextValve.java:161) at org.apache.catalina.core.StandardPipeline.doInvoke(StandardPipeline.java:757) at org.apache.catalina.core.StandardPipeline.invoke(StandardPipeline.java:577) at com.sun.enterprise.web.WebPipeline.invoke(WebPipeline.java:99) at org.apache.catalina.core.StandardHostValve.invoke(StandardHostValve.java:158) at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:371) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238) at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549) at java.base/java.lang.Thread.run(Thread.java:829) ]]

[2021-11-04T14:32:08.704+0100] [Payara 5.2021.5] [WARNING] [] [edu.harvard.iq.dataverse.DatasetFieldServiceBean] [tid: _ThreadID=73 _ThreadName=http-thread-pool::http-listener-1(5)] [timeMillis: 1636032728704] [levelValue: 900] [[ Ignoring External Vocabulary setting for non-existent field: cvocDemo]]

[2021-11-04T14:32:08.705+0100] [Payara 5.2021.5] [WARNING] [AS-EJB-00056] [javax.enterprise.ejb.container] [tid: _ThreadID=73 _ThreadName=http-thread-pool::http-listener-1(5)] [timeMillis: 1636032728705] [levelValue: 900] [[ A system exception occurred during an invocation on EJB DatasetFieldServiceBean, method: public java.util.Map edu.harvard.iq.dataverse.DatasetFieldServiceBean.getCVocConf(boolean)]]

[2021-11-04T14:32:08.705+0100] [Payara 5.2021.5] [WARNING] [] [javax.enterprise.ejb.container] [tid: _ThreadID=73 _ThreadName=http-thread-pool::http-listener-1(5)] [timeMillis: 1636032728705] [levelValue: 900] [[

javax.ejb.EJBException at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:723) at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:652) at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:482) at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4592) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2125) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2095) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90) at com.sun.proxy.$Proxy320.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.__EJB31_GeneratedDatasetFieldServiceBeanIntf__Bean.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.DatasetPage.getCVocConf(DatasetPage.java:5538) at jdk.internal.reflect.GeneratedMethodAccessor517.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at javax.el.ELUtil.invokeMethod(ELUtil.java:239) at javax.el.BeanELResolver.invoke(BeanELResolver.java:440) at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:198) at com.sun.el.parser.AstValue.getValue(AstValue.java:110) at com.sun.el.parser.AstValue.getValue(AstValue.java:177) at com.sun.el.parser.AstGreaterThan.getValue(AstGreaterThan.java:34) at com.sun.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:184) at org.jboss.weld.module.web.el.WeldValueExpression.getValue(WeldValueExpression.java:50) at com.sun.faces.facelets.el.TagValueExpression.getValue(TagValueExpression.java:73) at javax.faces.component.ComponentStateHelper.eval(ComponentStateHelper.java:170) at javax.faces.component.UIComponentBase.isRendered(UIComponentBase.java:313) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1640) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at com.sun.faces.application.view.FaceletViewHandlingStrategy.renderView(FaceletViewHandlingStrategy.java:468) at com.sun.faces.application.view.MultiViewHandler.renderView(MultiViewHandler.java:170) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at org.omnifaces.viewhandler.OmniViewHandler.renderView(OmniViewHandler.java:121) at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:102) at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:76) at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:199) at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:708) at javax.faces.webapp.FacesServlet.service(FacesServlet.java:451) at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816) at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683) at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527) at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497) at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379) at org.apache.catalina.core.StandardHostValve.custom(StandardHostValve.java:506) at org.apache.catalina.core.StandardHostValve.dispatchToErrorPage(StandardHostValve.java:695) at org.apache.catalina.core.StandardHostValve.status(StandardHostValve.java:384) at org.apache.catalina.core.StandardHostValve.throwable(StandardHostValve.java:318) at org.apache.catalina.core.StandardHostValve.postInvoke(StandardHostValve.java:216) at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:373) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238) at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549) at java.base/java.lang.Thread.run(Thread.java:829) Caused by: java.lang.NullPointerException at edu.harvard.iq.dataverse.DatasetFieldServiceBean.getCVocConf(DatasetFieldServiceBean.java:303) at jdk.internal.reflect.GeneratedMethodAccessor612.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4826) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at jdk.internal.reflect.GeneratedMethodAccessor272.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72) at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at jdk.internal.reflect.GeneratedMethodAccessor269.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375) at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4798) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4786) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) ... 69 more ]]

[2021-11-04T14:32:08.706+0100] [Payara 5.2021.5] [SEVERE] [] [javax.enterprise.resource.webcontainer.jsf.application] [tid: _ThreadID=73 _ThreadName=http-thread-pool::http-listener-1(5)] [timeMillis: 1636032728706] [levelValue: 1000] [[ Error Rendering View[/500.xhtml] javax.el.ELException: /dataverse_template.xhtml @89,73 rendered="#{DatasetPage.getCVocConf().size() > 0}": javax.ejb.EJBException at com.sun.faces.facelets.el.TagValueExpression.getValue(TagValueExpression.java:77) at javax.faces.component.ComponentStateHelper.eval(ComponentStateHelper.java:170) at javax.faces.component.UIComponentBase.isRendered(UIComponentBase.java:313) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1640) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at com.sun.faces.application.view.FaceletViewHandlingStrategy.renderView(FaceletViewHandlingStrategy.java:468) at com.sun.faces.application.view.MultiViewHandler.renderView(MultiViewHandler.java:170) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at org.omnifaces.viewhandler.OmniViewHandler.renderView(OmniViewHandler.java:121) at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:102) at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:76) at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:199) at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:708) at javax.faces.webapp.FacesServlet.service(FacesServlet.java:451) at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816) at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683) at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527) at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497) at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379) at org.apache.catalina.core.StandardHostValve.custom(StandardHostValve.java:506) at org.apache.catalina.core.StandardHostValve.dispatchToErrorPage(StandardHostValve.java:695) at org.apache.catalina.core.StandardHostValve.status(StandardHostValve.java:384) at org.apache.catalina.core.StandardHostValve.throwable(StandardHostValve.java:318) at org.apache.catalina.core.StandardHostValve.postInvoke(StandardHostValve.java:216) at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:373) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238) at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549) at java.base/java.lang.Thread.run(Thread.java:829) Caused by: javax.el.ELException: javax.ejb.EJBException at javax.el.ELUtil.invokeMethod(ELUtil.java:245) at javax.el.BeanELResolver.invoke(BeanELResolver.java:440) at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:198) at com.sun.el.parser.AstValue.getValue(AstValue.java:110) at com.sun.el.parser.AstValue.getValue(AstValue.java:177) at com.sun.el.parser.AstGreaterThan.getValue(AstGreaterThan.java:34) at com.sun.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:184) at org.jboss.weld.module.web.el.WeldValueExpression.getValue(WeldValueExpression.java:50) at com.sun.faces.facelets.el.TagValueExpression.getValue(TagValueExpression.java:73) ... 53 more Caused by: javax.ejb.EJBException at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:723) at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:652) at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:482) at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4592) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2125) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2095) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90) at com.sun.proxy.$Proxy320.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.__EJB31_GeneratedDatasetFieldServiceBeanIntf__Bean.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.DatasetPage.getCVocConf(DatasetPage.java:5538) at jdk.internal.reflect.GeneratedMethodAccessor517.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at javax.el.ELUtil.invokeMethod(ELUtil.java:239) ... 61 more Caused by: java.lang.NullPointerException at edu.harvard.iq.dataverse.DatasetFieldServiceBean.getCVocConf(DatasetFieldServiceBean.java:303) at jdk.internal.reflect.GeneratedMethodAccessor612.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4826) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at jdk.internal.reflect.GeneratedMethodAccessor272.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72) at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at jdk.internal.reflect.GeneratedMethodAccessor269.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375) at com.sun.ejb.containers.BaseContainer.__intercept(BaseContainer.java:4798) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4786) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) ... 69 more ]]

[2021-11-04T14:32:08.706+0100] [Payara 5.2021.5] [WARNING] [] [javax.enterprise.web.core] [tid: _ThreadID=73 _ThreadName=http-thread-pool::http-listener-1(5)] [timeMillis: 1636032728706] [levelValue: 900] [[ Servlet.service() for servlet Faces Servlet threw exception java.lang.NullPointerException at edu.harvard.iq.dataverse.DatasetFieldServiceBean.getCVocConf(DatasetFieldServiceBean.java:303) at jdk.internal.reflect.GeneratedMethodAccessor612.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4826) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at jdk.internal.reflect.GeneratedMethodAccessor272.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72) at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at jdk.internal.reflect.GeneratedMethodAccessor269.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4798) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4786) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90) at com.sun.proxy.$Proxy320.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.EJB31_GeneratedDatasetFieldServiceBeanIntf__Bean.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.DatasetPage.getCVocConf(DatasetPage.java:5538) at jdk.internal.reflect.GeneratedMethodAccessor517.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at javax.el.ELUtil.invokeMethod(ELUtil.java:239) at javax.el.BeanELResolver.invoke(BeanELResolver.java:440) at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:198) at com.sun.el.parser.AstValue.getValue(AstValue.java:110) at com.sun.el.parser.AstValue.getValue(AstValue.java:177) at com.sun.el.parser.AstGreaterThan.getValue(AstGreaterThan.java:34) at com.sun.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:184) at org.jboss.weld.module.web.el.WeldValueExpression.getValue(WeldValueExpression.java:50) at com.sun.faces.facelets.el.TagValueExpression.getValue(TagValueExpression.java:73) at javax.faces.component.ComponentStateHelper.eval(ComponentStateHelper.java:170) at javax.faces.component.UIComponentBase.isRendered(UIComponentBase.java:313) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1640) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at com.sun.faces.application.view.FaceletViewHandlingStrategy.renderView(FaceletViewHandlingStrategy.java:468) at com.sun.faces.application.view.MultiViewHandler.renderView(MultiViewHandler.java:170) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at org.omnifaces.viewhandler.OmniViewHandler.renderView(OmniViewHandler.java:121) at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:102) at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:76) at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:199) at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:708) at javax.faces.webapp.FacesServlet.service(FacesServlet.java:451) at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816) at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683) at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527) at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497) at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379) at org.apache.catalina.core.StandardHostValve.custom(StandardHostValve.java:506) at org.apache.catalina.core.StandardHostValve.dispatchToErrorPage(StandardHostValve.java:695) at org.apache.catalina.core.StandardHostValve.status(StandardHostValve.java:384) at org.apache.catalina.core.StandardHostValve.throwable(StandardHostValve.java:318) at org.apache.catalina.core.StandardHostValve.postInvoke(StandardHostValve.java:216) at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:373) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238) at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549) at java.base/java.lang.Thread.run(Thread.java:829) ]]

[2021-11-04T14:32:08.707+0100] [Payara 5.2021.5] [WARNING] [] [javax.enterprise.web] [tid: _ThreadID=73 _ThreadName=http-thread-pool::http-listener-1(5)] [timeMillis: 1636032728707] [levelValue: 900] [[ org.apache.catalina.core.StandardHostValve@70ee2c36: Exception Processing ErrorPage[errorCode=500, location=/500.xhtml] javax.servlet.ServletException at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:725) at javax.faces.webapp.FacesServlet.service(FacesServlet.java:451) at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816) at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683) at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527) at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497) at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379) at org.apache.catalina.core.StandardHostValve.custom(StandardHostValve.java:506) at org.apache.catalina.core.StandardHostValve.dispatchToErrorPage(StandardHostValve.java:695) at org.apache.catalina.core.StandardHostValve.status(StandardHostValve.java:384) at org.apache.catalina.core.StandardHostValve.throwable(StandardHostValve.java:318) at org.apache.catalina.core.StandardHostValve.postInvoke(StandardHostValve.java:216) at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:373) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238) at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549) at java.base/java.lang.Thread.run(Thread.java:829) Caused by: javax.ejb.EJBException at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:723) at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:652) at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:482) at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4592) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2125) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2095) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90) at com.sun.proxy.$Proxy320.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.EJB31_GeneratedDatasetFieldServiceBeanIntf__Bean.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.DatasetPage.getCVocConf(DatasetPage.java:5538) at jdk.internal.reflect.GeneratedMethodAccessor517.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at javax.el.ELUtil.invokeMethod(ELUtil.java:239) at javax.el.BeanELResolver.invoke(BeanELResolver.java:440) at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:198) at com.sun.el.parser.AstValue.getValue(AstValue.java:110) at com.sun.el.parser.AstValue.getValue(AstValue.java:177) at com.sun.el.parser.AstGreaterThan.getValue(AstGreaterThan.java:34) at com.sun.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:184) at org.jboss.weld.module.web.el.WeldValueExpression.getValue(WeldValueExpression.java:50) at com.sun.faces.facelets.el.TagValueExpression.getValue(TagValueExpression.java:73) at javax.faces.component.ComponentStateHelper.eval(ComponentStateHelper.java:170) at javax.faces.component.UIComponentBase.isRendered(UIComponentBase.java:313) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1640) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at com.sun.faces.application.view.FaceletViewHandlingStrategy.renderView(FaceletViewHandlingStrategy.java:468) at com.sun.faces.application.view.MultiViewHandler.renderView(MultiViewHandler.java:170) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at org.omnifaces.viewhandler.OmniViewHandler.renderView(OmniViewHandler.java:121) at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:102) at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:76) at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:199) at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:708) ... 38 more Caused by: java.lang.NullPointerException at edu.harvard.iq.dataverse.DatasetFieldServiceBean.getCVocConf(DatasetFieldServiceBean.java:303) at jdk.internal.reflect.GeneratedMethodAccessor612.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4826) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at jdk.internal.reflect.GeneratedMethodAccessor272.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72) at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at jdk.internal.reflect.GeneratedMethodAccessor269.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4798) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4786) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) ... 69 more ----- Root Cause ----- javax.ejb.EJBException at com.sun.ejb.containers.EJBContainerTransactionManager.processSystemException(EJBContainerTransactionManager.java:723) at com.sun.ejb.containers.EJBContainerTransactionManager.completeNewTx(EJBContainerTransactionManager.java:652) at com.sun.ejb.containers.EJBContainerTransactionManager.postInvokeTx(EJBContainerTransactionManager.java:482) at com.sun.ejb.containers.BaseContainer.postInvokeTx(BaseContainer.java:4592) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2125) at com.sun.ejb.containers.BaseContainer.postInvoke(BaseContainer.java:2095) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:220) at com.sun.ejb.containers.EJBLocalObjectInvocationHandlerDelegate.invoke(EJBLocalObjectInvocationHandlerDelegate.java:90) at com.sun.proxy.$Proxy320.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.EJB31_GeneratedDatasetFieldServiceBeanIntf__Bean.getCVocConf(Unknown Source) at edu.harvard.iq.dataverse.DatasetPage.getCVocConf(DatasetPage.java:5538) at jdk.internal.reflect.GeneratedMethodAccessor517.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at javax.el.ELUtil.invokeMethod(ELUtil.java:239) at javax.el.BeanELResolver.invoke(BeanELResolver.java:440) at javax.el.CompositeELResolver.invoke(CompositeELResolver.java:198) at com.sun.el.parser.AstValue.getValue(AstValue.java:110) at com.sun.el.parser.AstValue.getValue(AstValue.java:177) at com.sun.el.parser.AstGreaterThan.getValue(AstGreaterThan.java:34) at com.sun.el.ValueExpressionImpl.getValue(ValueExpressionImpl.java:184) at org.jboss.weld.module.web.el.WeldValueExpression.getValue(WeldValueExpression.java:50) at com.sun.faces.facelets.el.TagValueExpression.getValue(TagValueExpression.java:73) at javax.faces.component.ComponentStateHelper.eval(ComponentStateHelper.java:170) at javax.faces.component.UIComponentBase.isRendered(UIComponentBase.java:313) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1640) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at javax.faces.component.UIComponent.encodeAll(UIComponent.java:1650) at com.sun.faces.application.view.FaceletViewHandlingStrategy.renderView(FaceletViewHandlingStrategy.java:468) at com.sun.faces.application.view.MultiViewHandler.renderView(MultiViewHandler.java:170) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at javax.faces.application.ViewHandlerWrapper.renderView(ViewHandlerWrapper.java:132) at org.omnifaces.viewhandler.OmniViewHandler.renderView(OmniViewHandler.java:121) at com.sun.faces.lifecycle.RenderResponsePhase.execute(RenderResponsePhase.java:102) at com.sun.faces.lifecycle.Phase.doPhase(Phase.java:76) at com.sun.faces.lifecycle.LifecycleImpl.render(LifecycleImpl.java:199) at javax.faces.webapp.FacesServlet.executeLifecyle(FacesServlet.java:708) at javax.faces.webapp.FacesServlet.service(FacesServlet.java:451) at org.apache.catalina.core.StandardWrapper.service(StandardWrapper.java:1636) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:331) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.ocpsoft.rewrite.servlet.RewriteFilter.doFilter(RewriteFilter.java:226) at org.apache.catalina.core.ApplicationFilterChain.internalDoFilter(ApplicationFilterChain.java:253) at org.apache.catalina.core.ApplicationFilterChain.doFilter(ApplicationFilterChain.java:211) at org.apache.catalina.core.ApplicationDispatcher.doInvoke(ApplicationDispatcher.java:816) at org.apache.catalina.core.ApplicationDispatcher.invoke(ApplicationDispatcher.java:683) at org.apache.catalina.core.ApplicationDispatcher.processRequest(ApplicationDispatcher.java:527) at org.apache.catalina.core.ApplicationDispatcher.doDispatch(ApplicationDispatcher.java:497) at org.apache.catalina.core.ApplicationDispatcher.dispatch(ApplicationDispatcher.java:379) at org.apache.catalina.core.StandardHostValve.custom(StandardHostValve.java:506) at org.apache.catalina.core.StandardHostValve.dispatchToErrorPage(StandardHostValve.java:695) at org.apache.catalina.core.StandardHostValve.status(StandardHostValve.java:384) at org.apache.catalina.core.StandardHostValve.throwable(StandardHostValve.java:318) at org.apache.catalina.core.StandardHostValve.postInvoke(StandardHostValve.java:216) at org.apache.catalina.connector.CoyoteAdapter.doService(CoyoteAdapter.java:373) at org.apache.catalina.connector.CoyoteAdapter.service(CoyoteAdapter.java:238) at com.sun.enterprise.v3.services.impl.ContainerMapper$HttpHandlerCallable.call(ContainerMapper.java:520) at com.sun.enterprise.v3.services.impl.ContainerMapper.service(ContainerMapper.java:217) at org.glassfish.grizzly.http.server.HttpHandler.runService(HttpHandler.java:182) at org.glassfish.grizzly.http.server.HttpHandler.doHandle(HttpHandler.java:156) at org.glassfish.grizzly.http.server.HttpServerFilter.handleRead(HttpServerFilter.java:218) at org.glassfish.grizzly.filterchain.ExecutorResolver$9.execute(ExecutorResolver.java:95) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeFilter(DefaultFilterChain.java:260) at org.glassfish.grizzly.filterchain.DefaultFilterChain.executeChainPart(DefaultFilterChain.java:177) at org.glassfish.grizzly.filterchain.DefaultFilterChain.execute(DefaultFilterChain.java:109) at org.glassfish.grizzly.filterchain.DefaultFilterChain.process(DefaultFilterChain.java:88) at org.glassfish.grizzly.ProcessorExecutor.execute(ProcessorExecutor.java:53) at org.glassfish.grizzly.nio.transport.TCPNIOTransport.fireIOEvent(TCPNIOTransport.java:524) at org.glassfish.grizzly.strategies.AbstractIOStrategy.fireIOEvent(AbstractIOStrategy.java:89) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.run0(WorkerThreadIOStrategy.java:94) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy.access$100(WorkerThreadIOStrategy.java:33) at org.glassfish.grizzly.strategies.WorkerThreadIOStrategy$WorkerThreadRunnable.run(WorkerThreadIOStrategy.java:114) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.doWork(AbstractThreadPool.java:569) at org.glassfish.grizzly.threadpool.AbstractThreadPool$Worker.run(AbstractThreadPool.java:549) at java.base/java.lang.Thread.run(Thread.java:829) Caused by: java.lang.NullPointerException at edu.harvard.iq.dataverse.DatasetFieldServiceBean.getCVocConf(DatasetFieldServiceBean.java:303) at jdk.internal.reflect.GeneratedMethodAccessor612.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at org.glassfish.ejb.security.application.EJBSecurityManager.runMethod(EJBSecurityManager.java:588) at org.glassfish.ejb.security.application.EJBSecurityManager.invoke(EJBSecurityManager.java:408) at com.sun.ejb.containers.BaseContainer.invokeBeanMethod(BaseContainer.java:4826) at com.sun.ejb.EjbInvocation.invokeBeanMethod(EjbInvocation.java:665) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:834) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.doCall(SystemInterceptorProxy.java:163) at com.sun.ejb.containers.interceptors.SystemInterceptorProxy.aroundInvoke(SystemInterceptorProxy.java:140) at jdk.internal.reflect.GeneratedMethodAccessor272.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.EjbInvocation.proceed(EjbInvocation.java:615) at org.jboss.weld.module.ejb.AbstractEJBRequestScopeActivationInterceptor.aroundInvoke(AbstractEJBRequestScopeActivationInterceptor.java:72) at org.jboss.weld.module.ejb.SessionBeanInterceptor.aroundInvoke(SessionBeanInterceptor.java:52) at jdk.internal.reflect.GeneratedMethodAccessor269.invoke(Unknown Source) at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) at java.base/java.lang.reflect.Method.invoke(Method.java:566) at com.sun.ejb.containers.interceptors.AroundInvokeInterceptor.intercept(InterceptorManager.java:888) at com.sun.ejb.containers.interceptors.AroundInvokeChainImpl.invokeNext(InterceptorManager.java:833) at com.sun.ejb.containers.interceptors.InterceptorManager.intercept(InterceptorManager.java:375) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4798) at com.sun.ejb.containers.BaseContainer.intercept(BaseContainer.java:4786) at com.sun.ejb.containers.EJBLocalObjectInvocationHandler.invoke(EJBLocalObjectInvocationHandler.java:212) ... 69 more ]] `

Which version of Dataverse are you using? 5.7

Any related open or closed issues to this bug report? I guess I should mention here the repository: https://github.com/gdcc/dataverse-external-vocab-support

I might have overlooked some requirenments, in this case, those should be probably mentioned in the manual.

pdurbin commented 2 years ago

Caused by: java.lang.NullPointerException at edu.harvard.iq.dataverse.DatasetFieldServiceBean.getCVocConf(DatasetFieldServiceBean.java:303)

Here's where the NPE is coming from:

https://github.com/IQSS/dataverse/blob/v5.7/src/main/java/edu/harvard/iq/dataverse/DatasetFieldServiceBean.java#L303

sergejzr commented 2 years ago

Hmm.. if "dft" is null, there should be already a logger message in line 298 (but i can not see it)

https://github.com/IQSS/dataverse/blob/v5.7/src/main/java/edu/harvard/iq/dataverse/DatasetFieldServiceBean.java#L298

qqmyers commented 2 years ago

Looks like the cvoc-conf.json demo script is out of date w.r.t. the cvocdemo.tsv block. The name of the field has changed from cvocDemo to compoundDemo. Unless we also want to consider it a Dataverse issue to fail when the cvoc config contains non-existent fields, we should make this an issue for the other repo and/or make the PR to update the example json. (@sergejzr - if you're not able to make the change, I can probably do it later today but I won't have time to test - in that case if you could test/review the PR it would be helpful.)

sergejzr commented 2 years ago

Thanks @qqmyers! Yes I can test it tomorrow!

sergejzr commented 2 years ago

Without yet having a chance to test it deeply, the first attempt worked very well. Browsing vocabulary, ORCID search, etc work as expected. Thanks!

Unfortunately, there seems to be some issue with my solr setup, so I can not save dataverses and datasets at the moment. I will continue and report if there will be any issues.

PS: The result ranking for ORCID seems to have room for improvement. If you try, for example "Sergej Zerr", the perfect match is at the very end of the list (although correctly identified in bold) with many irrelevant entries before, so one has to scroll down to find the correct match.

UP: Actually, I tried with some other persons I know ,and the perfect matches seem always be on the last position (Thus, it seems, the list is just needs to be reversed)

pdurbin commented 2 years ago

Unfortunately, there seems to be some issue with my solr setup, so I can not save dataverses and datasets at the moment. I will continue and report if there will be any issues.

Just a thought, did you do the "Update your solr schema to include the custom fields" step at https://github.com/gdcc/dataverse-external-vocab-support ?

For more on this, please see https://guides.dataverse.org/en/5.7/admin/metadatacustomization.html#updating-the-solr-schema

sergejzr commented 2 years ago

It was a very good though! Thank you, @pdurbin! Yes, this was the problem. Thank you, @qqmyers for updating the JSON file, it seems to work smoothly now!

Nevertheless, it is a quite complex setup to add own metadata fields and should be the best configurable from a UI. I guess for the most of the users, using "standard" metadata is kind of fine, but not optimal in the most of the cases.

I summarize the additional outcomes of this thread: (1) A null pointer exception in https://github.com/IQSS/dataverse/blob/v5.7/src/main/java/edu/harvard/iq/dataverse/DatasetFieldServiceBean.java#L303 should be avoided when adding "non-existung" fields and a meaningful error message should be generated instead (2) The result list for dynamic vocabulary should be reversed.

Overall, the problem is solved, thank you very much again for the support. I guess the issue can be closed. I will post the rank of the elements in ORCID as a separate issue.

https://github.com/gdcc/dataverse-external-vocab-support/issues/8

qqmyers commented 2 years ago

Please put an Orcid issue in the https://github.com/gdcc/dataverse-external-vocab-support. Thanks!