Closed jbarnoud closed 3 weeks ago
This has not occurred in a while and I do not remember what the issue was exactly. Closing for now.
Nevermind, it did not occur anymore because I skipped the tests... We should remove the skip to see if the issue is still there.
It finally returned:
Run python -m pytest --cov nanover python-libraries -n auto -m 'not serial'
============================= test session starts =============================
platform win32 -- Python 3.12.6, pytest-[8](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:9).3.3, pluggy-1.5.0
rootdir: D:\a\nanover-protocol\nanover-protocol
configfile: pytest.ini
plugins: anyio-4.6.0, hypothesis-6.112.1, cov-5.0.0, timeout-2.3.1, xdist-3.6.1
created: 2/2 workers
2 workers [818 items]
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Windows fatal exception: access violation
Thread 0x000011d4 (most recent call first):
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 534 in read
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 567 in from_io
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1160 in _thread_receiver
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 341 in run
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 411 in _perform_spawn
Current thread 0x00001[9](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:10)28 (most recent call first):
File "<frozen importlib._bootstrap>", line 488 in _call_with_frames_removed
File "<frozen importlib._bootstrap_external>", line 1297 in exec_module
File "<frozen importlib._bootstrap>", line 935 in _load_unlocked
File "<frozen importlib._bootstrap>", line 1331 in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 1360 in _find_and_load
File "<frozen importlib._bootstrap>", line 488 in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1415 in _handle_fromlist
File "C:\Miniconda3\envs\test\Lib\site-packages\nanover\lammps\LammpsImd.py", line 86 in __init__
File "D:\a\nanover-protocol\nanover-protocol\python-libraries\nanover-lammps\tests\test_lammps_converter.py", line 19 in lammps_hook
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 891 in call_fixture_func
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 1140 in pytest_fixture_setup
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line [10](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:11)3 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 1091 in execute
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 617 in _get_active_fixturedef
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 532 in getfixturevalue
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 697 in _fillfixtures
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\python.py", line 1630 in setup
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 514 in setup
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 160 in pytest_runtest_setup
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 242 in <lambda>
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 341 in from_call
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 241 in call_and_report
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 126 in runtestprotocol
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line [11](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:12)3 in pytest_runtest_protocol
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line [12](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:13)0 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 5[13](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:14) in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 195 in run_one_test
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 174 in pytest_runtestloop
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 337 in _main
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 283 in wrap_session
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 330 in pytest_cmdline_main
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 393 in <module>
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1291 in executetask
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 341 in run
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 411 in _perform_spawn
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 389 in integrate_as_primary_thread
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1273 in serve
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1806 in serve
File "<string>", line 8 in <module>
File "<string>", line 1 in <module>
....[gw0] node down: Not properly terminated
F
replacing crashed worker gw0
........................................................................ [ 79%]
........................................................................ [ 88%]
Windows fatal exception: access violation
Thread 0x00000fc4 (most recent call first):
File "C:\Miniconda3\envs\test\Lib\concurrent\futures\thread.py", line 89 in _worker
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1012 in run
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1075 in _bootstrap_inner
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1032 in _bootstrap
Thread 0x000013b8 (most recent call first):
File "C:\Miniconda3\envs\test\Lib\concurrent\futures\thread.py", line 89 in _worker
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1012 in run
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1075 in _bootstrap_inner
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1032 in _bootstrap
......[gw2] node down: Not properly terminated
Thread 0x000019c4 (most recent call first):
File "C:\Miniconda3\envs\test\Lib\concurrent\futures\thread.py", line 89 in _worker
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1012 in run
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1075 in _bootstrap_inner
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1032 in _bootstrap
Thread 0x00000478 (most recent call first):
File "C:\Miniconda3\envs\test\Lib\concurrent\futures\thread.py", line 89 in _worker
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1012 in run
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1075 in _bootstrap_inner
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1032 in _bootstrap
Thread 0x000009d4 (most recent call first):
File "C:\Miniconda3\envs\test\Lib\site-packages\nanover\essd\server.py", line [14](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:15)1 in _broadcast
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1012 in run
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1075 in _bootstrap_inner
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1032 in _bootstrap
Thread 0x00000614 (most recent call first):
File "C:\Miniconda3\envs\test\Lib\site-packages\grpc\_server.py", line 1330 in _serve
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1012 in run
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1075 in _bootstrap_inner
File "C:\Miniconda3\envs\test\Lib\threading.py", line 1032 in _bootstrap
Thread 0x00000554 (most recent call first):
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 534 in read
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 567 in from_io
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1160 in _thread_receiver
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 341 in run
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 411 in _perform_spawn
Current thread 0x00000d08 (most recent call first):
File "<frozen importlib._bootstrap>", line 488 in _call_with_frames_removed
File "<frozen importlib._bootstrap_external>", line 1297 in exec_module
File "<frozen importlib._bootstrap>", line 935 in _load_unlocked
File "<frozen importlib._bootstrap>", line 1331 in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 1360 in _find_and_load
File "<frozen importlib._bootstrap>", line 488 in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 14[15](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:16) in _handle_fromlist
File "C:\Miniconda3\envs\test\Lib\site-packages\nanover\lammps\LammpsImd.py", line 86 in __init__
File "D:\a\nanover-protocol\nanover-protocol\python-libraries\nanover-lammps\tests\test_lammps_converter.py", line 19 in lammps_hook
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 891 in call_fixture_func
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 1140 in pytest_fixture_setup
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 1091 in execute
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 617 in _get_active_fixturedef
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 532 in getfixturevalue
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 697 in _fillfixtures
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\python.py", line [16](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:17)30 in setup
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 514 in setup
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 160 in pytest_runtest_setup
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 242 in <lambda>
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 341 in from_call
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 241 in call_and_report
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 126 in runtestprotocol
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 113 in pytest_runtest_protocol
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 195 in run_one_test
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line [17](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:18)4 in pytest_runtestloop
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 337 in _main
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 283 in wrap_session
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 330 in pytest_cmdline_main
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 393 in <module>
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1291 in executetask
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 341 in run
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 411 in _perform_spawn
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 389 in integrate_as_primary_thread
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1273 in serve
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line [18](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:19)06 in serve
File "<string>", line 8 in <module>
File "<string>", line 1 in <module>
F
replacing crashed worker gw2
Windows fatal exception: access violation
Thread 0x000007bc (most recent call first):
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 534 in read
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 567 in from_io
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1160 in _thread_receiver
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 341 in run
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 411 in _perform_spawn
Current thread 0x00000948 (most recent call first):
File "<frozen importlib._bootstrap>", line 488 in _call_with_frames_removed
File "<frozen importlib._bootstrap_external>", line 1297 in exec_module
File "<frozen importlib._bootstrap>", line 935 in _load_unlocked
File "<frozen importlib._bootstrap>", line 1331 in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 1360 in _find_and_load
File "<frozen importlib._bootstrap>", line 488 in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1415 in _handle_fromlist
File "C:\Miniconda3\envs\test\Lib\site-packages\nanover\lammps\LammpsImd.py", line 86 in __init__
File "D:\a\nanover-protocol\nanover-protocol\python-libraries\nanover-lammps\tests\test_lammps_converter.py", line [19](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:20) in lammps_hook
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 891 in call_fixture_func
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 1140 in pytest_fixture_setup
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 1[20](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:21) in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 1091 in execute
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 617 in _get_active_fixturedef
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 532 in getfixturevalue
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 697 in _fillfixtures
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\python.py", line 1630 in setup
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 514 in setup
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 160 in pytest_runtest_setup
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 242 in <lambda>
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 341 in from_call
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 241 in call_and_report
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 126 in runtestprotocol
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 113 in pytest_runtest_protocol
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 195 in run_one_test
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 174 in pytest_runtestloop
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 337 in _main
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 283 in wrap_session
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 330 in pytest_cmdline_main
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 393 in <module>
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1291 in executetask
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 341 in run
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 411 in _perform_spawn
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 389 in integrate_as_primary_thread
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1273 in serve
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1806 in serve
File "<string>", line 8 in <module>
File "<string>", line 1 in <module>
.............[gw3] node down: Not properly terminated
F
replacing crashed worker gw3
Windows fatal exception: access violation
Thread 0x00000578 (most recent call first):
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 534 in read
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 567 in from_io
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1160 in _thread_receiver
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 341 in run
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 411 in _perform_spawn
Current thread 0x000009c8 (most recent call first):
File "<frozen importlib._bootstrap>", line 488 in _call_with_frames_removed
File "<frozen importlib._bootstrap_external>", line 1297 in exec_module
File "<frozen importlib._bootstrap>", line 935 in _load_unlocked
File "<frozen importlib._bootstrap>", line 1331 in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 1360 in _find_and_load
File "<frozen importlib._bootstrap>", line 488 in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1415 in _handle_fromlist
File "C:\Miniconda3\envs\test\Lib\site-packages\nanover\lammps\LammpsImd.py", line 86 in __init__
File "D:\a\nanover-protocol\nanover-protocol\python-libraries\nanover-lammps\tests\test_lammps_converter.py", line 19 in lammps_hook
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 891 in call_fixture_func
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 1140 in pytest_fixture_setup
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 1091 in execute
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 617 in _get_active_fixturedef
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 532 in getfixturevalue
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 697 in _fillfixtures
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\python.py", line 1630 in setup
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 514 in setup
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 160 in pytest_runtest_setup
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 242 in <lambda>
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 341 in from_call
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 241 in call_and_report
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 126 in runtestprotocol
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 113 in pytest_runtest_protocol
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 195 in run_one_test
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 174 in pytest_runtestloop
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 337 in _main
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 283 in wrap_session
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 330 in pytest_cmdline_main
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 393 in <module>
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1291 in executetask
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 341 in run
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 411 in _perform_spawn
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 389 in integrate_as_primary_thread
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1273 in serve
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1806 in serve
File "<string>", line 8 in <module>
File "<string>", line 1 in <module>
..........................[gw4] node down: Not properly terminated
F
replacing crashed worker gw4
Windows fatal exception: access violation
Thread 0x00001550 (most recent call first):
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 534 in read
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 567 in from_io
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1160 in _thread_receiver
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 341 in run
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 411 in _perform_spawn
Current thread 0x00000638 (most recent call first):
File "<frozen importlib._bootstrap>", line 488 in _call_with_frames_removed
File "<frozen importlib._bootstrap_external>", line 1297 in exec_module
File "<frozen importlib._bootstrap>", line 935 in _load_unlocked
File "<frozen importlib._bootstrap>", line 1331 in _find_and_load_unlocked
File "<frozen importlib._bootstrap>", line 1360 in _find_and_load
File "<frozen importlib._bootstrap>", line 488 in _call_with_frames_removed
File "<frozen importlib._bootstrap>", line 1415 in _handle_fromlist
File "C:\Miniconda3\envs\test\Lib\site-packages\nanover\lammps\LammpsImd.py", line 86 in __init__
File "D:\a\nanover-protocol\nanover-protocol\python-libraries\nanover-lammps\tests\test_lammps_converter.py", line 19 in lammps_hook
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 891 in call_fixture_func
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 1140 in pytest_fixture_setup
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 1091 in execute
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 617 in _get_active_fixturedef
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 532 in getfixturevalue
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\fixtures.py", line 697 in _fillfixtures
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\python.py", line 1630 in setup
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 514 in setup
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 160 in pytest_runtest_setup
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 242 in <lambda>
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 341 in from_call
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 241 in call_and_report
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 126 in runtestprotocol
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\runner.py", line 113 in pytest_runtest_protocol
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 195 in run_one_test
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 174 in pytest_runtestloop
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 337 in _main
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 283 in wrap_session
File "C:\Miniconda3\envs\test\Lib\site-packages\_pytest\main.py", line 330 in pytest_cmdline_main
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_callers.py", line 103 in _multicall
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_manager.py", line 120 in _hookexec
File "C:\Miniconda3\envs\test\Lib\site-packages\pluggy\_hooks.py", line 513 in __call__
File "C:\Miniconda3\envs\test\Lib\site-packages\xdist\remote.py", line 393 in <module>
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1291 in executetask
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 341 in run
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 411 in _perform_spawn
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 389 in integrate_as_primary_thread
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1273 in serve
File "C:\Miniconda3\envs\test\Lib\site-packages\execnet\gateway_base.py", line 1806 in serve
File "<string>", line 8 in <module>
File "<string>", line 1 in <module>
......[gw5] node down: Not properly terminated
F
replacing crashed worker gw5
...................................... [100%]
================================== FAILURES ===================================
_______ python-libraries/nanover-lammps/tests/test_lammps_converter.py ________
[gw0] win32 -- Python 3.12.6 C:\Miniconda3\envs\test\python.exe
worker 'gw0' crashed while running 'python-libraries/nanover-lammps/tests/test_lammps_converter.py::test_length_lammps_atoms'
_______ python-libraries/nanover-lammps/tests/test_lammps_converter.py ________
[gw2] win32 -- Python 3.12.6 C:\Miniconda3\envs\test\python.exe
worker 'gw2' crashed while running 'python-libraries/nanover-lammps/tests/test_lammps_converter.py::test_get_atoms'
_______ python-libraries/nanover-lammps/tests/test_lammps_converter.py ________
[gw3] win32 -- Python 3.12.6 C:\Miniconda3\envs\test\python.exe
worker 'gw3' crashed while running 'python-libraries/nanover-lammps/tests/test_lammps_converter.py::test_main_hook'
_______ python-libraries/nanover-lammps/tests/test_lammps_converter.py ________
[gw4] win32 -- Python 3.12.6 C:\Miniconda3\envs\test\python.exe
worker 'gw4' crashed while running 'python-libraries/nanover-lammps/tests/test_lammps_converter.py::test_elements_lammps_atoms'
_______ python-libraries/nanover-lammps/tests/test_lammps_converter.py ________
[gw5] win32 -- Python 3.12.6 C:\Miniconda3\envs\test\python.exe
worker 'gw5' crashed while running 'python-libraries/nanover-lammps/tests/test_lammps_converter.py::test_forces_lammps_atoms'
============================== warnings summary ===============================
python-libraries/nanover-ase/tests/test_ase_simulation_imd.py::test_ase_imd_dynamics
python-libraries/nanover-ase/tests/test_ase_simulation_imd.py::test_ase_imd_run_forever
C:\Miniconda3\envs\test\Lib\site-packages\ase\neighborlist.py:980: RuntimeWarning: invalid value encountered in cast
offsets = offsets.round().astype(int)
-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
---------- coverage: platform win32, python 3.12.6-final-0 -----------
---------------------- coverage: failed workers ----------------------
The following workers failed to return coverage data, ensure that pytest-cov is installed on these workers.
gw0
gw2
gw3
gw4
gw5
Name Stmts Miss Cover
-------------------------------------------------------------------------------------------------------
C:\Miniconda3\envs\test\Lib\site-packages\nanover\app\__init__.py 6 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\app\app_server.py 83 4 95%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\app\client.py 347 54 84%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\app\frame_app.py 19 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\app\imd_app.py 17 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\app\multiuser.py 19 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\app\runner.py 42 13 69%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\app\selection.py 129 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\ase\__init__.py 4 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\ase\converter.py 87 46 47%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\ase\frame_adaptor.py 11 6 45%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\ase\imd.py 149 92 38%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\ase\imd_calculator.py 130 9 93%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\ase\null_calculator.py 8 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\ase\openmm\__init__.py 3 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\ase\openmm\calculator.py 62 5 92%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\ase\openmm\runner.py 203 102 50%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\ase\trajectory_logger.py 83 6 93%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\ase\wall_constraint.py 26 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\command\__init__.py 2 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\command\command_info.py 24 3 88%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\command\command_service.py 58 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\core\__init__.py 4 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\core\grpc_client.py 30 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\core\grpc_server.py 50 5 90%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\core\nanover_client.py 70 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\core\nanover_server.py 42 1 98%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\essd\__init__.py 5 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\essd\client.py 52 1 98%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\essd\server.py 102 9 91%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\essd\servicehub.py 77 10 87%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\essd\utils.py 47 16 66%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\imd\__init__.py 4 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\imd\imd_client.py 44 3 93%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\imd\imd_force.py 97 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\imd\imd_server.py 14 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\imd\imd_state.py 53 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\imd\particle_interaction.py 82 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\lammps\LammpsImd.py 188 143 24%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\lammps\__init__.py 2 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\lammps\conversions.py 8 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\lammps\mock.py 37 28 24%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\mdanalysis\__init__.py 2 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\mdanalysis\converter.py 114 14 88%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\mdanalysis\universe.py 161 30 81%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\omni\__init__.py 1 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\omni\ase_omm.py 91 7 92%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\omni\cli.py 80 62 22%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\omni\omni.py 153 29 81%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\omni\openmm.py 87 1 99%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\omni\playback.py 64 10 84%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\omni\record.py 23 15 35%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\openmm\__init__.py 3 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\openmm\converter.py 55 6 89%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\openmm\imd.py 158 23 85%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\openmm\nanoverreporter.py 22 14 36%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\openmm\potentials.py 18 12 33%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\openmm\runner.py 248 151 39%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\openmm\serializer.py 74 27 64%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\recording\reading.py 109 8 93%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\recording\writing.py 32 8 75%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\state\state_dictionary.py 50 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\state\state_service.py 85 4 95%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\testing\__init__.py 1 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\testing\asserts.py 20 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\trajectory\__init__.py 4 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\trajectory\frame_client.py 23 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\trajectory\frame_data.py [21](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:22)7 19 91%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\trajectory\frame_publisher.py 79 3 96%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\trajectory\frame_server.py 36 2 94%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\utilities\__init__.py 0 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\utilities\change_buffers.py 113 6 95%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\utilities\event.py 11 1 91%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\utilities\grpc_utilities.py 10 2 80%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\utilities\key_lockable_map.py 62 10 84%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\utilities\protobuf_utilities.py [33](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:34) 0 100%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\utilities\request_queues.py 76 13 83%
C:\Miniconda3\envs\test\Lib\site-packages\nanover\utilities\timing.py 38 3 92%
-------------------------------------------------------------------------------------------------------
TOTAL 4873 10[36](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:37) 79%
=========================== short test summary info ===========================
FAILED python-libraries/nanover-lammps/tests/test_lammps_converter.py::test_length_lammps_atoms
FAILED python-libraries/nanover-lammps/tests/test_lammps_converter.py::test_get_atoms
FAILED python-libraries/nanover-lammps/tests/test_lammps_converter.py::test_main_hook
FAILED python-libraries/nanover-lammps/tests/test_lammps_converter.py::test_elements_lammps_atoms
FAILED python-libraries/nanover-lammps/tests/test_lammps_converter.py::test_forces_lammps_atoms
============ 5 failed, 813 passed, 2 warnings in 1[41](https://github.com/IRL2/nanover-protocol/actions/runs/11052367776/job/30704412671?pr=244#step:7:42).58s (0:02:21) ============
Closed as we aren't support LAMMPS for now
Can we get more info in here on how to reproduce this? Looks like something to do with a lammps test?