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ISA-tools / BioInvIndex

The web application, model, database persistence, services package and web services for the BII. Led by Eamonn Maguire (Uni. of Oxford) & Philippe Rocca-Serra (Uni. of Oxford).
http://www.isa-tools.org
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Intermittent problem with being unable to download study data #48

Closed HazelMurphy closed 12 years ago

HazelMurphy commented 12 years ago

Dear Eamonn

For some reason out of the 9 datasets I have loaded one (NEBC-S-8) is not allowing access to the ISA study data. See the urls below. It seems only for one dataset the final location of the data files on our server has not been updating and instead the database is pointing to a different location which no longer exists.

http://bii.nwl.ac.uk/bioinvindex/study.seam;jsessionid=A4610EB984F7AC825A43E5DD0D6117D5?studyId=NEBC-S-8

http://bii.nwl.ac.uk/repo/submission_repo/study_NEBC-S-8_IEfDVQa2Nz/

The only difference I can make of the ISA files is that NEBC-S-8 was the only one loaded as a full ISAarchive zip file.

Would you be able to advise on how we rectify this?

Regards

Hazel

eamonnmag commented 12 years ago

This is working now. There is a built in server cache storing the studies. If the study was unloaded then reloaded, the obfuscation code will change. Therefore you need to access clearStudyCache.seam to reset the cache on the application server.

So to clear cache: http://bii.nwl.ac.uk/bioinvindex/clearStudyCache.seam

http://bii.nwl.ac.uk/repo/submission_repo/study_NEBC-S-8_0mRs10NyjC/

HazelMurphy commented 12 years ago

Many thanks Eamonn

Do you have a list of solutions like this anywhere? I've copied in Tim so he will know this one in future but would be good to keep these solutions somewhere together for those of us learning the system.

Hazel

-----Original Message----- From: Eamonn Maguire [mailto:reply@reply.github.com] Sent: 17 February 2012 09:29 To: Murphy, Hazel Subject: Re: [BioInvIndex] Intermittent problem with being unable to download study data (#48)

This is working now. There is a built in server cache storing the studies. If the study was unloaded then reloaded, the obfuscation code will change. Therefore you need to access clearStudyCache.seam to reset the cache on the application server.

So to clear cache: http://bii.nwl.ac.uk/bioinvindex/clearStudyCache.seam

http://bii.nwl.ac.uk/repo/submission_repo/study_NEBC-S-8_0mRs10NyjC/

Reply to this email directly or view it on GitHub: https://github.com/ISA-tools/BioInvIndex/issues/48#issuecomment-4017439

This message (and any attachments) is for the recipient only. NERC is subject to the Freedom of Information Act 2000 and the contents of this email and any reply you make may be disclosed by NERC unless it is exempt from release under the Act. Any material supplied to NERC may be stored in an electronic records management system.

eamonnmag commented 12 years ago

@proccaserra and I will add an FAQ section to the wiki for the BioInvIndex with this information.

Thanks,

Eamonn

HazelMurphy commented 12 years ago

Brilliant

-----Original Message----- From: Eamonn Maguire [mailto:reply@reply.github.com] Sent: 17 February 2012 09:40 To: Murphy, Hazel Subject: Re: [BioInvIndex] Intermittent problem with being unable to download study data (#48)

@proccaserra and I will add an FAQ section to the wiki for the BioInvIndex with this information.

Thanks,

Eamonn

Reply to this email directly or view it on GitHub: https://github.com/ISA-tools/BioInvIndex/issues/48#issuecomment-4017559

This message (and any attachments) is for the recipient only. NERC is subject to the Freedom of Information Act 2000 and the contents of this email and any reply you make may be disclosed by NERC unless it is exempt from release under the Act. Any material supplied to NERC may be stored in an electronic records management system.

HazelMurphy commented 12 years ago

Sorry where is this wiki?

-----Original Message----- From: Eamonn Maguire [mailto:reply@reply.github.com] Sent: 17 February 2012 09:40 To: Murphy, Hazel Subject: Re: [BioInvIndex] Intermittent problem with being unable to download study data (#48)

@proccaserra and I will add an FAQ section to the wiki for the BioInvIndex with this information.

Thanks,

Eamonn

Reply to this email directly or view it on GitHub: https://github.com/ISA-tools/BioInvIndex/issues/48#issuecomment-4017559

This message (and any attachments) is for the recipient only. NERC is subject to the Freedom of Information Act 2000 and the contents of this email and any reply you make may be disclosed by NERC unless it is exempt from release under the Act. Any material supplied to NERC may be stored in an electronic records management system.

eamonnmag commented 12 years ago

At the minute, it's now here :)

https://github.com/ISA-tools/BioInvIndex/wiki/FAQ

On 17 February 2012 09:51, HazelMurphy < reply@reply.github.com

wrote:

Sorry where is this wiki?

-----Original Message----- From: Eamonn Maguire [mailto:reply@reply.github.com] Sent: 17 February 2012 09:40 To: Murphy, Hazel Subject: Re: [BioInvIndex] Intermittent problem with being unable to download study data (#48)

@proccaserra and I will add an FAQ section to the wiki for the BioInvIndex with this information.

Thanks,

Eamonn

Reply to this email directly or view it on GitHub: https://github.com/ISA-tools/BioInvIndex/issues/48#issuecomment-4017559

This message (and any attachments) is for the recipient only. NERC is subject to the Freedom of Information Act 2000 and the contents of this email and any reply you make may be disclosed by NERC unless it is exempt from release under the Act. Any material supplied to NERC may be stored in an electronic records management system.

Reply to this email directly or view it on GitHub: https://github.com/ISA-tools/BioInvIndex/issues/48#issuecomment-4017665

Eamonn Maguire
Lead Software Engineer - ISA tools http://www.isa-tools.org

University of Oxford Tel: +44(0)1865 610788 Oxford e-Research Center
7 Keble Road, Oxford skype: maguire1986

OX1 3QG, UK