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ISA-tools / ISAcreator

ISAcreator is a Java desktop application which allows for the creation and editing of ISA-Tab files. Originally developed by Eamonn Maguire, with further contributions by Alejandra Gonzalez-Beltran, David Johnson and Philippe Rocca-Serra (Uni. of Oxford).
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MAGEtab export: better Unit support #283

Closed sneumann closed 10 years ago

sneumann commented 10 years ago

I have a factor "Sampling time", which is defined in the Investigation, and added to the s_Study.txt with Units "hour" from UO:

"Factor Value[Sampling time]"   "Unit"  "Term Source REF"       "Term Accession Number"
"6"                             "hour"  "UO"                    "http://purl.obolibrary.org/obo/UO_0000032"

This gets exported into sdrf.txt as: "Factor Value[Sampling time]" "Unit[UnknownUnitType]"

while it should be: Unit[TimeUnit] for ArrayExpress.

Yours, Steffen

eamonnmag commented 10 years ago

Hi Steffen,

This is a report for the ISAconverter code base here https://github.com/ISA-tools/ISAvalidator-ISAconverter-BIImanager which is called through ISAcreator.

agbeltran commented 10 years ago

Moved to https://github.com/ISA-tools/ISAvalidator-ISAconverter-BIImanager/issues/56