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ISA-tools / isa-api

ISA tools API
https://isa-tools.org
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Unable to install isatools due to PyYAML build failure #498

Closed JeremyLeland closed 2 months ago

JeremyLeland commented 1 year ago

I tried installing isatools today via pip and hit build errors in the PyYAML dependency.

I'm seeing many apps that use PyYAML breaking recently after a new release of Cython, see: https://github.com/yaml/pyyaml/issues/601. It looks like a temporary fix for this was released as PyYAML 6.0.1: https://github.com/yaml/pyyaml/pull/702

This project is explicitly depending on PyYAML~=5.4.1. Is the project able to use PyYAML 6.0.1?

jake-emerson commented 1 year ago

Another (temporary) option is to allow PyYAML version 5.3.1. See: https://github.com/yaml/pyyaml/issues/601#issuecomment-1712822411

jlbales commented 1 year ago

I am also having this issue. Is there a workaround for this?

jake-emerson commented 11 months ago

Hi all. Same issue here. Moving back to 5.3.1 does seem to work, but also has a security issue: https://security.snyk.io/vuln/SNYK-PYTHON-PYYAML-590151.

proccaserra commented 11 months ago

Hi all, apologies to the delay. fixed in master will work on a release asap