Upon executing the command -
isatab.dump(investigation, out_dir)
only 'i_investigation.txt' is generated, and corresponding study or assay files are missing.
On the other hand, a json file containing all investigation, study and assays data is generated successfully via -
with open(os.path.join(out_dir, "isa.json"), "w") as out_file:
json.dump(
investigation,
out_file,
cls=ISAJSONEncoder,
sort_keys=True,
indent=4,
separators=(',', ': '))
Hello,
Upon executing the command - isatab.dump(investigation, out_dir) only 'i_investigation.txt' is generated, and corresponding study or assay files are missing.
On the other hand, a json file containing all investigation, study and assays data is generated successfully via - with open(os.path.join(out_dir, "isa.json"), "w") as out_file: json.dump( investigation, out_file, cls=ISAJSONEncoder, sort_keys=True, indent=4, separators=(',', ': '))
I am using isatools 0.14.2
Thank you for your support in advance.
Doroteya