ISATAB serialization: effect of presence/absence to "Term Source REF" "Term Accession" on parsing - Githubissues

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ISATAB serialization: effect of presence/absence to "Term Source REF" "Term Accession" on parsing #515

Open proccaserra opened 6 months ago

proccaserra commented 6 months ago

Source Name | Characteristics | Sample Name and Source Name | Characteristics | Term Accession Number | Term Source REF | Sample Name

Will be serialised differently in JSON with characteristics.value being output as str() or OntologyAnnotation() respectively.
Affects round-tripping expectations

Documentation is needed to fully qualify this aspect and good practices for producing ISA-Tab (ISA JSON) documents.