ISA-tools / linkedISA

Package to convert ISA-TAB files into RDF data relying on different semantic frameworks (OWL ontologies).
http://isa-tools.github.io/linkedISA/
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missing dependency from non-responsive server oerc #17

Open cbaakman opened 3 years ago

cbaakman commented 3 years ago

I'm trying to build linkedISA 1.0.1-SNAPSHOT. However this fails at a certain point when it needs to download a dependency. When I run the build.sh, this is what happens:

[ERROR] Failed to execute goal on project isa-graphparser: Could not resolve dependencies for project org.isatools:isa-graphparser:jar:1.0.1-SNAPSHOT: Failed to collect dependencies at org.isatools:ISAcreator:jar:1.7.7: Failed to read artifact descriptor for org.isatools:ISAcreator:jar:1.7.7: Could not transfer artifact org.isatools:ISAcreator:pom:1.7.7 from/to oerc (http://frog.oerc.ox.ac.uk:8080/nexus-2.1.2/content/groups/oerc): Transfer failed for http://frog.oerc.ox.ac.uk:8080/nexus-2.1.2/content/groups/oerc/org/isatools/ISAcreator/1.7.7/ISAcreator-1.7.7.pom: Connect to frog.oerc.ox.ac.uk:8080 [frog.oerc.ox.ac.uk/129.67.195.77] failed: Connection timed out (Connection timed out) -> [Help 1]
[ERROR]
[ERROR] To see the full stack trace of the errors, re-run Maven with the -e switch.
[ERROR] Re-run Maven using the -X switch to enable full debug logging.
[ERROR]
[ERROR] For more information about the errors and possible solutions, please read the following articles:
[ERROR] [Help 1] http://cwiki.apache.org/confluence/display/MAVEN/DependencyResolutionException
[ERROR]
[ERROR] After correcting the problems, you can resume the build with the command
[ERROR]   mvn <args> -rf :isa-graphparser

It seems that the dependency server at (http://frog.oerc.ox.ac.uk:8080/ doesn't respond.

Is there an alternative?

proccaserra commented 3 years ago

@cbaakman. Thanks for reporting and sorry for the late reply. We've been investigating and we are working on making the repo available again. Also (caveat emptor) you've probably noticed that this is quite an old code that is no longer maintained so things may be not behaved nominally.

cbaakman commented 3 years ago

OK, does this mean that the linkedISA software is no longer available? Should I download a newer version from anywhere else?

Any suggestions? Thanks!