Consider using -o OUT_PATH as-is

ISA-tools / mzml2isa

Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure

GNU General Public License v3.0

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Consider using -o OUT_PATH as-is #24

Closed sneumann closed 7 years ago

sneumann commented 7 years ago

Hi, if I run mzml2isa -i IN_PATH -o OUT_PATH -s STUDY_ID , the output is placed into OUT_PATH/STUDY_ID. If I am on the commandline, I can happily run mzml2isa -i IN_PATH -o OUT_PATH/STUDY_ID -s STUDY_ID, i.e. I would prefer if OUT_PATH is under my full control. Yours, Steffen

Tomnl commented 7 years ago

Hi @sneumann, thanks for your comment.

This seems sensible and won't require many changes. I will look into it next week.

althonos commented 7 years ago

I guess it could be feasible to use a -O flag to keep a backwards compatible API :)

Tomnl commented 7 years ago

Updated and merged #26 . Let me know if there is any problems with the new code.

I will close the issue if I don't hear anything back.