Plattform missing for multiple Assays

ISA-tools / mzml2isa

Parser to get meta information from mzML file and parse relevant information to a ISA-Tab structure

GNU General Public License v3.0

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Closed sneumann closed 6 years ago

sneumann commented 6 years ago

Hi, when running on a set of mzML files, some in pos, some in neg, mzml2isa creates two assays. The first is correctly shown:

Assay 1
Assay file name: a_MTBLSX_POS_metabolite_profiling_mass_spectrometry.txt
Technology: mass spectrometry
Platform: micrOTOF-Q

The second has an empty Plattform:

Assay  2
Assay file name: a_MTBLSX_NEG_metabolite_profiling_mass_spectrometry.txt
Technology: mass spectrometry
Platform:

I can send some test files in private mail if needed. Yours, Steffen

Tomnl commented 6 years ago

Hi Steffen,

Thanks for the message. That's strange I thought we had fixed this issue.

Could you send me the files please?

Tomnl commented 6 years ago

Also, what version of mzml2isa are you using?

(The master branch is currently ahead of the releases and conda versions)

sneumann commented 6 years ago

Hi, sorry for omitting the version, I have mzml2isa 0.4.28 Will try with master later. Yours, Steffen

sneumann commented 6 years ago

Indeed, fixed in mzml2isa 0.5.2 Merci, yours, Steffen